Locus 3662

Sequence ID X_DroMel_CAF1
Location 9,797,495 – 9,797,613
Length 118
Max. P 0.677074
window6003

overview

Window 3

Location 9,797,495 – 9,797,613
Length 118
Sequences 3
Columns 118
Reading direction reverse
Mean pairwise identity 94.81
Mean single sequence MFE -31.90
Consensus MFE -29.97
Energy contribution -30.63
Covariance contribution 0.67
Combinations/Pair 1.00
Mean z-score -1.71
Structure conservation index 0.94
SVM decision value 0.30
SVM RNA-class probability 0.677074
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9797495 118 - 22224390
AAAAAAACAGCGAGAGCAGAGGUAGUACGAACUGCAAACAGCUUAUUUUGCAUUUGAGUAAUGUGCGUUAAAUUAUUUGAGUGUGUAGGCCACAACAUCUCGGCGGAAGUGUGCUUGU
.........(((((.((.((((((((....))))).....((((((...(((((..((((((.........))))))..)))))))))))........))).((....)))).))))) ( -31.30)
>DroSec_CAF1 12185 111 - 1
----AAACAGCGAGAGCAGAGGUAGUACGAACUGCAAACAGCUUAUUUUGCAUUUGAGUAAUGUGCGUUAAAUUAUUUGAGUGUGUAGGCCAC---AUCUCCGCGGAAGUGUGUUUGU
----(((((((....)).((((((((....))))).....((((((...(((((..((((((.........))))))..)))))))))))...---..)))(((....)))))))).. ( -32.20)
>DroSim_CAF1 13318 111 - 1
----AAACAGCGAGAGCAGAGGUAGUACGAACUGCAAACAGCUUAUUUUGCAUUUGAGUAAUGUGCGUUAAAUUAUUUGAGUGUGUAGGCCAC---AUCUCCGCGGAAGUGUGUUUGU
----(((((((....)).((((((((....))))).....((((((...(((((..((((((.........))))))..)))))))))))...---..)))(((....)))))))).. ( -32.20)
>consensus
____AAACAGCGAGAGCAGAGGUAGUACGAACUGCAAACAGCUUAUUUUGCAUUUGAGUAAUGUGCGUUAAAUUAUUUGAGUGUGUAGGCCAC___AUCUCCGCGGAAGUGUGUUUGU
....(((((((....)).((((((((....))))).....((((((...(((((..((((((.........))))))..)))))))))))........)))(((....)))))))).. (-29.97 = -30.63 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:05:06 2006