Locus 366

Sequence ID X_DroMel_CAF1
Location 1,118,118 – 1,118,225
Length 107
Max. P 0.825152
window550

overview

Window 0

Location 1,118,118 – 1,118,225
Length 107
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 67.10
Mean single sequence MFE -28.46
Consensus MFE -18.86
Energy contribution -18.74
Covariance contribution -0.12
Combinations/Pair 1.41
Mean z-score -1.31
Structure conservation index 0.66
SVM decision value 0.69
SVM RNA-class probability 0.825152
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1118118 107 + 22224390
GUUAGCAUGCAGUAAUUACUGAGGCUAAUACCUCGUUCUCGACCGGGUGCGAUCCACCAGGUUGUCGAACAUAGGGGGAUA-AGGUGAGGCCCGCGG------------GAAAUGGAAAU
((((((...((((....))))..)))))).((...((((((..(((((((.((((.((..(((....)))....)))))).-..))...))))))))------------)))..)).... ( -35.20)
>DroSec_CAF1 14800 84 + 1
----------AGUAAUUGAUGCGACUAAUACCUCAUUCUCGACCGGGUGCGAUCCACCAGGUUCAGGAACAUGGGGGGAAA-AG-------------------------GAAAUGGAAAU
----------.(((.....)))........(((((((((.((((.((((.....)))).)))).))))...))))).....-..-------------------------........... ( -19.00)
>DroSim_CAF1 15408 84 + 1
----------AGUAAUUGAUGCGACUAAUACCUCAUUCUCGACCGGGUGAGAUCCACCAGGUUGAGGAACAUGGGGGGAAG-AG-------------------------GAAAUGGAAAU
----------.....((.((....((....((((((((((((((.((((.....)))).)))))))))...))))).....-))-------------------------...)).))... ( -26.30)
>DroEre_CAF1 15890 120 + 1
UCUAACAUGCAGUAAUUGCUUGGGCUAAUACCUCAUUCUCGGCUGGGCGCGAUCCAUCAGGUUGGGGAAUAUAGGGGAGGAAAUGUGAAGCCCGCGGGCAAUGGAAAUGGAAAUAGAAAU
((((.(((......((((((((((((.(((((((.(((((((((.((......))....)))))))))........))))...)))..))))))..))))))....)))....))))... ( -31.50)
>DroYak_CAF1 15052 96 + 1
GCUAACAUCCAGUAAUUGCUGGGGCUGAUACCUCGUUCUCAUCUGGGUGCGAUCCACCAGGUUGAGAAAUACAGAGGGGAA------------------------AAUGGAUGUGGAAAU
.(((.((((((......((....)).....((((.((((((.((.((((.....)))).)).)))))).....))))....------------------------..))))))))).... ( -30.30)
>consensus
__UA_CAU_CAGUAAUUGCUGCGGCUAAUACCUCAUUCUCGACCGGGUGCGAUCCACCAGGUUGAGGAACAUAGGGGGAAA_AG_________________________GAAAUGGAAAU
..............................((((.(((((((((.((((.....)))).))))))))).....))))........................................... (-18.86 = -18.74 +  -0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:41 2006