Locus 3656

Sequence ID X_DroMel_CAF1
Location 9,793,862 – 9,793,961
Length 99
Max. P 0.627332
window5984

overview

Window 4

Location 9,793,862 – 9,793,961
Length 99
Sequences 3
Columns 99
Reading direction reverse
Mean pairwise identity 91.92
Mean single sequence MFE -27.17
Consensus MFE -23.99
Energy contribution -24.00
Covariance contribution 0.01
Combinations/Pair 1.10
Mean z-score -1.83
Structure conservation index 0.88
SVM decision value 0.19
SVM RNA-class probability 0.627332
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9793862 99 - 22224390
CAAGCAUAUUGCCAUAUUAUGUUCCAUGUUGCCAUCAAAAUGAACGGUAUAUGCAUUUAUGCUAAGAGUAGAAAUAUGCCGCCGUUUCUGGUGGCUGAA
..((((((.(((.((((..(((((.((.(((....))).)))))))..)))))))..))))))....(((....)))(((((((....))))))).... ( -27.00)
>DroSec_CAF1 8582 99 - 1
GAAGCAUAUUCCCAUAUUAUGCUCCAAGUUUCCAUCAAAAUGAACGGUGCAUGCAUUUGUGCAAAGAGUAGAAAUAUGCCGCCGUUUCUGGUGGGUGAA
(.((((((.........)))))).).....(((((((....(((((((((((..((((.(((.....))).))))))).)))))))).))))))).... ( -28.50)
>DroSim_CAF1 9716 99 - 1
GUCGCAUAUUCCCAUAUUAUGCUCCAAGUUUCCAUCAAAAUGAACGGUGCAUGCAUUUGUGCAAAGAGUAGAAAUAUGCCGCCGUUUCUGGUGGCUGAA
...(((((.........))))).........((((((....(((((((((((..((((.(((.....))).))))))).)))))))).))))))..... ( -26.00)
>consensus
GAAGCAUAUUCCCAUAUUAUGCUCCAAGUUUCCAUCAAAAUGAACGGUGCAUGCAUUUGUGCAAAGAGUAGAAAUAUGCCGCCGUUUCUGGUGGCUGAA
...(((((.........)))))........(((((((....(((((((((((..((((.(((.....))).))))))).)))))))).))))))).... (-23.99 = -24.00 +   0.01)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:49 2006