Locus 3652

Sequence ID X_DroMel_CAF1
Location 9,790,755 – 9,790,857
Length 102
Max. P 0.851549
window5970

overview

Window 0

Location 9,790,755 – 9,790,857
Length 102
Sequences 3
Columns 102
Reading direction forward
Mean pairwise identity 96.73
Mean single sequence MFE -32.10
Consensus MFE -30.85
Energy contribution -30.97
Covariance contribution 0.11
Combinations/Pair 1.04
Mean z-score -1.96
Structure conservation index 0.96
SVM decision value 0.79
SVM RNA-class probability 0.851549
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9790755 102 + 22224390
CCUUCUGGCGAAUGGCGAAAGGCGAAAGGACUAGGGACAGGCAGCAAAAUAUGGCAUCCCAGGUCCUGGCAAACGCCAAACGCUUAAAUAAACUGACUGUAA
......((((..(((((....((...((((((.((((..(.((........)).).)))).)))))).))...)))))..)))).................. ( -33.10)
>DroSec_CAF1 5495 102 + 1
CCUUCUGCCGAAUGGCGAAUGGCGAAAGGACUAGGGACAGGCAGCAAGAUAUGGCAUCCCGGGUCCUGGCAAACGCCAAACGCUUAAAUAAACUGACUGUAA
..(((.(((....)))))).((((..((((((.((((..(.((........)).).)))).))))))(((....)))...)))).................. ( -30.60)
>DroSim_CAF1 6640 102 + 1
CCUUCUGGCGAAUGGCGAAUGGCGAAAGGACUAGGGACAGGCGGCAAGAUAUGGCAUCCCGGGUCCUGGCAAACGCCAAACGCUUAAAUAAACUGACUGUAA
......((((..(((((....((...((((((.((((...((.(.......).)).)))).)))))).))...)))))..)))).................. ( -32.60)
>consensus
CCUUCUGGCGAAUGGCGAAUGGCGAAAGGACUAGGGACAGGCAGCAAGAUAUGGCAUCCCGGGUCCUGGCAAACGCCAAACGCUUAAAUAAACUGACUGUAA
......((((..(((((....((...((((((.((((..(.((........)).).)))).)))))).))...)))))..)))).................. (-30.85 = -30.97 +   0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:37 2006