Locus 3651

Sequence ID X_DroMel_CAF1
Location 9,790,316 – 9,790,422
Length 106
Max. P 0.831575
window5969

overview

Window 9

Location 9,790,316 – 9,790,422
Length 106
Sequences 3
Columns 106
Reading direction forward
Mean pairwise identity 96.20
Mean single sequence MFE -40.10
Consensus MFE -37.33
Energy contribution -37.11
Covariance contribution -0.22
Combinations/Pair 1.03
Mean z-score -2.06
Structure conservation index 0.93
SVM decision value 0.72
SVM RNA-class probability 0.831575
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9790316 106 + 22224390
GGUGUUGCUGCUUGCUGUGUUGCCCCAAAGCUGUUUGUUGCUAGCGAGCUGGCUAGAUGGCAGCAUUAUGCAGGCUCGCCCGAGCACAAGACACCAAAAACCAACA
((((((.((((.....((((((((....((((((((((.....)))))).))))....))))))))...))))((((....))))....))))))........... ( -42.10)
>DroSec_CAF1 5061 104 + 1
GGUGUUGCUGCUUGCUG--UUGGCCCGGAGCUGUUUGUUGGUAGCGAGCUGGCUAGAUGGCAGCAUUAUGCAGGCUCGCCCGAGCACAAGACACCAAAAACCAACA
((((((.((((.(((((--((((((.((.((((........))))...)))))))....))))))....))))((((....))))....))))))........... ( -39.10)
>DroSim_CAF1 6206 104 + 1
GGUGUUGCUGCUUGCUG--UUGGCCCGGAGCUGUUUGUUGGUAGCGAGCUGGCUAGAUGGCAGCAUUAUGCAGGCUCGCCCGAGCACAAGACACCAAAAACCAACA
((((((.((((.(((((--((((((.((.((((........))))...)))))))....))))))....))))((((....))))....))))))........... ( -39.10)
>consensus
GGUGUUGCUGCUUGCUG__UUGGCCCGGAGCUGUUUGUUGGUAGCGAGCUGGCUAGAUGGCAGCAUUAUGCAGGCUCGCCCGAGCACAAGACACCAAAAACCAACA
((((((.((((.(((((.......(((.((((((((((.....)))))).))))...))))))))....))))((((....))))....))))))........... (-37.33 = -37.11 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:36 2006