Locus 3649

Sequence ID X_DroMel_CAF1
Location 9,784,776 – 9,784,882
Length 106
Max. P 0.986001
window5966

overview

Window 6

Location 9,784,776 – 9,784,882
Length 106
Sequences 3
Columns 115
Reading direction forward
Mean pairwise identity 77.98
Mean single sequence MFE -33.52
Consensus MFE -20.83
Energy contribution -21.17
Covariance contribution 0.34
Combinations/Pair 1.16
Mean z-score -2.55
Structure conservation index 0.62
SVM decision value 2.03
SVM RNA-class probability 0.986001
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9784776 106 + 22224390
AGUCGGUGGCCAAAGAGCGGCUGGCCAA-AAAAUAGAAGAAGCUCGUCGAAGAUUCCAGGCGAAAAAGCCAGGAGUA---GCAGCACUUGGCUAUGCAAAAAC-----ACCAGAG
....((((((......)).(((((((((-......((......))((.(...(((((.(((......))).))))).---.).))..))))))).)).....)-----))).... ( -31.60)
>DroEre_CAF1 79229 96 + 1
AGUCGCUGGCCAA----------------AAAAUAGAAGAAGCCCGUCGAAGAUUCCUGGCUAAAAAGCCAGGAGCG---GCUGCACUUGGCCAUGCAAAACCAGGCGACCAGAG
.((((((((((((----------------...........(((((......).(((((((((....))))))))).)---)))....)))))).((......))))))))..... ( -33.86)
>DroYak_CAF1 71908 110 + 1
AGUCGGUGGCCAAAGAGCGGCUGGCCAAAAAAGUAGAAGAAGCCCGUCGAAGAUGCCUGGUGAAAAAGCCAGGAGCGCCAGCUUCACUUGGCUAUGCAAAAAC-----ACCAGAG
....((((((......)).((((((((....(((.((((..((.((((...))))((((((......))))))...))...))))))))))))).)).....)-----))).... ( -35.10)
>consensus
AGUCGGUGGCCAAAGAGCGGCUGGCCAA_AAAAUAGAAGAAGCCCGUCGAAGAUUCCUGGCGAAAAAGCCAGGAGCG___GCUGCACUUGGCUAUGCAAAAAC_____ACCAGAG
.((..((((((((.........................................(((((((......)))))))((....)).....)))))))))).................. (-20.83 = -21.17 +   0.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:33 2006