| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,778,211 – 9,778,316 |
| Length | 105 |
| Max. P | 0.716690 |
| Location | 9,778,211 – 9,778,316 |
|---|---|
| Length | 105 |
| Sequences | 3 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 64.63 |
| Mean single sequence MFE | -24.13 |
| Consensus MFE | -8.76 |
| Energy contribution | -10.60 |
| Covariance contribution | 1.84 |
| Combinations/Pair | 1.25 |
| Mean z-score | -2.78 |
| Structure conservation index | 0.36 |
| SVM decision value | 0.39 |
| SVM RNA-class probability | 0.716690 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9778211 105 - 22224390 C-------ACAAUGCCGCAGUUCGGACAAUUAAUUGGUUUAUUUACGCAUUGUCUUGCUUUUUGCUAGAACAUUUAAAUGUGCAAUAGCACAACGAACUGUUCGGCAUUAAA .-------..((((((((((((((.....((((.((((......))......(((.((.....)).))).)).)))).(((((....))))).)))))))..)))))))... ( -31.30) >DroSec_CAF1 74659 79 - 1 -----------------------GCACAAUUAAAUGGUUUAUUUACGCAUUGUCUUGCUUUUUGCUAGAACAUUG-CACAUUUAAUAGCACAACAAACUGUUC--------- -----------------------((...((((((((((......))(((.(((((.((.....)).)).))).))-).)))))))).))..............--------- ( -16.50) >DroYak_CAF1 65248 106 - 1 CACAAUACACAAUGCUAAAGUUUGGACAAUUAAUUGGUUUAUUUACGCAAU-----GCUUUUUGCUGGAACAUUG-CCCACUUAAUAGUUCAACAAACUGUGUGGCAUUUAG ..........(((((((.(((((((((.(((((.(((.........(((((-----(.((((....)))))))))-)))).))))).)))))...))))...)))))))... ( -24.60) >consensus C_______ACAAUGC___AGUU_GGACAAUUAAUUGGUUUAUUUACGCAUUGUCUUGCUUUUUGCUAGAACAUUG_CACAUUUAAUAGCACAACAAACUGUUCGGCAUU_A_ ..........(((((((.((((((......................(((......))).....((((..................))))....))))))...)))))))... ( -8.76 = -10.60 + 1.84)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:28 2006