Locus 3644

Sequence ID X_DroMel_CAF1
Location 9,769,917 – 9,770,018
Length 101
Max. P 0.998773
window5957

overview

Window 7

Location 9,769,917 – 9,770,018
Length 101
Sequences 5
Columns 101
Reading direction reverse
Mean pairwise identity 92.60
Mean single sequence MFE -24.40
Consensus MFE -21.08
Energy contribution -21.88
Covariance contribution 0.80
Combinations/Pair 1.00
Mean z-score -2.49
Structure conservation index 0.86
SVM decision value 3.22
SVM RNA-class probability 0.998773
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9769917 101 - 22224390
ACUUAAUUAAUUAAAAAAAAAAGAAGAGGAAUAGCACAAACAGCGACUUCAUCUGGAAUCAAUAGCUGGGUGAAGCUCAUAACUUGGCUUUUUGCCAAGGU
.........................(((.....((.......))..(((((((..(.........)..))))))))))....((((((.....)))))).. ( -24.60)
>DroSec_CAF1 66505 97 - 1
ACUUAAUUAAUUAAA----AAAGAAGAGGAGUAGCACAAACAGCGACUUCAUCUGGAAUCAAUAGCUGGGUGAAGCUCAUAACUUGGCUUUUUGCCAAGGU
...............----.........((((..(((...((((((.(((....))).))....)))).)))..))))....((((((.....)))))).. ( -25.50)
>DroSim_CAF1 22095 97 - 1
ACUUAAUUAAUUAAA----AAAGAAGAGGAGUAGCACAAACAGCGACUUCAUCUGGAAUCAAUAGCUGGGUGAAGCUCAUAACUUGGCUUUUUGCCAAUGU
...............----.........((((..(((...((((((.(((....))).))....)))).)))..))))...(((((((.....))))).)) ( -21.90)
>DroEre_CAF1 64991 97 - 1
ACUUAAUUAAUUAAA----AAGGAAUAGGAACAGCGCAAGCAGCGACUUCAUCUGUAGUCAAUAGCAGGGUGAAGCUCAUAACUUGGCUUUUAGCCAAGGU
...............----..............((....))...((((((((((((........))).))))))).))....((((((.....)))))).. ( -25.60)
>DroYak_CAF1 56795 97 - 1
ACUUAAUUAAUUAAA----AAUGAAGAGAAAUAGCACAAACAGCAACUUCAUCUGGAAUCAAUAGCUGGGUGAAGCUCAUAACUUGGCUUUUUGCCAAGGU
...............----......(((.....((.......))..(((((((..(.........)..))))))))))....((((((.....)))))).. ( -24.40)
>consensus
ACUUAAUUAAUUAAA____AAAGAAGAGGAAUAGCACAAACAGCGACUUCAUCUGGAAUCAAUAGCUGGGUGAAGCUCAUAACUUGGCUUUUUGCCAAGGU
.........................(((.....((.......))..((((((((((.........)))))))))))))....((((((.....)))))).. (-21.08 = -21.88 +   0.80)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:25 2006