Locus 3640

Sequence ID X_DroMel_CAF1
Location 9,743,158 – 9,743,254
Length 96
Max. P 0.579366
window5953

overview

Window 3

Location 9,743,158 – 9,743,254
Length 96
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 74.55
Mean single sequence MFE -29.09
Consensus MFE -9.44
Energy contribution -8.80
Covariance contribution -0.63
Combinations/Pair 1.43
Mean z-score -2.20
Structure conservation index 0.32
SVM decision value 0.09
SVM RNA-class probability 0.579366
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9743158 96 + 22224390
UAAUUGAUGGG-CGAGGGCC-------GAGUUGUUACUU-------UGCUUUUUUGCAUUUUGAUUAACAUUCAAUUGGCCAGUUGGUCAAUUGACA---UUUUUGGUUGGCCU
...........-...(((((-------(((((((((...-------(((......)))...))).))))..((((((((((....))))))))))..---.......))))))) ( -29.00)
>DroPse_CAF1 43779 105 + 1
UAAUUGAUGGCCCGAGGGUC-------G--UUUCUGCUUUUGGCCAGGUUUUGUUGCGCUUUGAUUAGCAGUCAAUUGGCGCCUUCAUCAAUUGAAACUAUUUUUGGCCACCAU
.....(((((((....))))-------)--))........((((((((....(((((((((((((.....)))))..)))))..(((.....))))))....)))))))).... ( -32.00)
>DroSec_CAF1 35191 96 + 1
UAAUUGAUGGG-CGAGGGCC-------GAGUUGUUACUU-------CGCUUUUUUGCAUUUUGAUUAACAUUCAAUUGGUCAGUUGGUCAAUUUACA---UUUUUGGUUGGCCU
.(((((((.((-(((((((.-------((((....))))-------.)))..)))))...((((.......)))).).)))))))((((((((....---.....)))))))). ( -24.00)
>DroEre_CAF1 31463 95 + 1
UAAUUGAUGGG-CGAGGGCU-------GAGCUGUUACUU-------GCCU-UUUUGCAUUUUGAUUAACAUUCACGUGGUCAGUUGGUCAAUUGAAG---UUUUCGGUUGGCCU
.((((((((((-(((((((.-------.....))).)))-------))))-.....(((..(((.......))).))))))))))((((((((((..---...)))))))))). ( -28.80)
>DroYak_CAF1 29629 103 + 1
UAAUUGAUGGG-CGAGGGCCGAGGACCGAGUUGUUACUU-------GGCUUUUUUGCAUUUUGAUUAACAUUCGCUUGGUCAGUUGGUCAAUUGAAG---UUUUUGGGUUGGCU
((((((((.((-((((.((.(((((((((((....))))-------)).))))).)).............))))).).))))))))(((((((.((.---...)).))))))). ( -28.74)
>DroPer_CAF1 44680 105 + 1
UAAUUGAUGGCCCGAGGGUC-------G--UUUCUGCUUUUGGCCAGGUUUUGUUGCGCUUUGAUUAGCAGUCAAUUGGCGCCUUCAUCAAUUGAAACUAUUUUUGGCCACCAU
.....(((((((....))))-------)--))........((((((((....(((((((((((((.....)))))..)))))..(((.....))))))....)))))))).... ( -32.00)
>consensus
UAAUUGAUGGG_CGAGGGCC_______GAGUUGUUACUU_______GGCUUUUUUGCAUUUUGAUUAACAUUCAAUUGGCCAGUUGGUCAAUUGAAA___UUUUUGGUUGGCCU
................((((...........(((((.((........((......)).....)).))))).((((((((((....))))))))))..........))))..... ( -9.44 =  -8.80 +  -0.63)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:22 2006