Locus 364

Sequence ID X_DroMel_CAF1
Location 1,113,581 – 1,113,695
Length 114
Max. P 0.588492
window546

overview

Window 6

Location 1,113,581 – 1,113,695
Length 114
Sequences 5
Columns 114
Reading direction reverse
Mean pairwise identity 84.42
Mean single sequence MFE -34.40
Consensus MFE -22.32
Energy contribution -23.80
Covariance contribution 1.48
Combinations/Pair 1.06
Mean z-score -1.87
Structure conservation index 0.65
SVM decision value 0.11
SVM RNA-class probability 0.588492
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1113581 114 - 22224390
CAGAUUGCGAACGUCCUUGCAGGCACACCACGCAACUGGCGUAUCUCCGCUGCACUCCAAUGUAUUCGCUUAUCUGGAGGGCAGUGACUAAUGACGCCUCGCUCCUCAGAUACU
..((..((((......((((.((....))..))))..(((((.....((((((.((((((((........))).))))).)))))).......)))))))))...))....... ( -34.00)
>DroSec_CAF1 10228 114 - 1
CAGAUUGCGAACGUCCUUGCAGGUACACCACGCAACUGGCGUAUCUCCGCUGCACUCCAAUGUUUUCGCUUAUCUGGAGGGCAGUGACUAAUGACGCCUCGCUCCUCAGAUACU
..((..((((.((((.(((.((((((.(((......))).)))))).((((((.((((((((........))).))))).))))))..))).))))..))))...))....... ( -37.10)
>DroSim_CAF1 10827 114 - 1
CAGAUUGCGAACGUCCUUGCAGGUACACCACGCAACUGGCGUAUCUCCGCUGCACUCCAAUGUUUUCGCUUAUCUGGAGGGCAGUGACUAAUGACGCCUCGCUCCUCAGAUACU
..((..((((.((((.(((.((((((.(((......))).)))))).((((((.((((((((........))).))))).))))))..))).))))..))))...))....... ( -37.10)
>DroEre_CAF1 11462 109 - 1
CAGAUUGCGAACGUCCUUGCACA----CCUCGCAAGUGGCGUAUCUCCGCUGCACUCCACUGGCUUCGCUUAUCUG-AGGGCAGUGACUAAUGACGCCUCGCUCCUCAGAUACU
......((((((((((((((...----....))))).)))))......((((........)))).)))).((((((-(((((.(((.(....).)))...)).))))))))).. ( -36.00)
>DroYak_CAF1 10431 90 - 1
CAGAUUGCGAACGUCCUUGCACG----CA---------------CACCACUGCACUGCAAUGCCUUCGCUUAUCUGGAGGGCAGUGACUAACGAU-----ACUCCUCGGAUACU
(((((.(((((.((..(((((.(----((---------------......)))..))))).)).)))))..)))))((((..((((.(....).)-----)))))))....... ( -27.80)
>consensus
CAGAUUGCGAACGUCCUUGCAGG_ACACCACGCAACUGGCGUAUCUCCGCUGCACUCCAAUGUCUUCGCUUAUCUGGAGGGCAGUGACUAAUGACGCCUCGCUCCUCAGAUACU
..((..((((.((((.(((..........((((.....)))).....((((((.((((((((........))).))))).))))))..))).))))..))))...))....... (-22.32 = -23.80 +   1.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:37 2006