Locus 3639

Sequence ID X_DroMel_CAF1
Location 9,743,022 – 9,743,123
Length 101
Max. P 0.979435
window5952

overview

Window 2

Location 9,743,022 – 9,743,123
Length 101
Sequences 6
Columns 120
Reading direction forward
Mean pairwise identity 69.45
Mean single sequence MFE -32.73
Consensus MFE -19.32
Energy contribution -19.80
Covariance contribution 0.48
Combinations/Pair 1.50
Mean z-score -1.97
Structure conservation index 0.59
SVM decision value 1.84
SVM RNA-class probability 0.979435
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9743022 101 + 22224390
GUCAUCCGCCGGUUUUCUCCGA--------UUAUUUCGUUUGGAU-----------UUGGAUUUGGAUUCUUUCGGCCAAUUGCCGUGACGCUUUUGGCCGCAAAUGGAAACCGGUAAGA
.......(((((((((((((((--------....((((.......-----------.)))).)))))...((((((((((..((......))..))))))).))).)))))))))).... ( -35.20)
>DroPse_CAF1 43636 113 + 1
GUCGUGCAUGGGUCUUGCCCAACAC--UGGAUGUUUUGGCGGUUUUCUUCAUUAAUAUUGA-CCAAAUUCUUUGGGCCAAUUG----GUCAGUGCAGGCCCUAAAUGGAAACCGGUAAGA
...(((..((((.....)))).)))--......(((((.((((((((.(((.......)))-...........(((((.(((.----...)))...))))).....)))))))).))))) ( -31.50)
>DroSec_CAF1 35055 101 + 1
GUCAUCCGCCGGUUUUCUCCGA--------UUAUUUCGUUUGGAU-----------UUGGAUUUGGAUUCUUUCGGCCAAUUGCCGUGUCGCUUUUGGCCGCAAAUGGAAACCGGUAAGA
.......(((((((((((((((--------....((((.......-----------.)))).)))))...((((((((((..((......))..))))))).))).)))))))))).... ( -35.20)
>DroEre_CAF1 31333 95 + 1
GUCAUCCGCCCGUUUUCUCCGA--------CUGUUUCGGUUGGAU-----------------UUGGAUUCUUUCGGCCAACUGCCGUGUCGCUUUUGGCCGCAAAUGGAAACCGGUAAGA
.......(((.(((((((((((--------(((...)))))))).-----------------........((((((((((..((......))..))))))).))).)))))).))).... ( -31.90)
>DroYak_CAF1 29499 95 + 1
GUCAUCCGCUGGUUUUCUCCGA--------AUAUUUCGAUUGUAU-----------------UUGGAUUCUUUUGGCCAAUUGUCGUGUCGCUUUUGGCCGCAAAUGGAAACCGGUAAGU
.......(((((((((((((((--------((((.......))))-----------------))))).......((((((..((......))..))))))......)))))))))).... ( -33.20)
>DroPer_CAF1 44535 115 + 1
GUCGUGCAUGGGUCUUGCCCAACACUCUGGAUGUUUUGGCGGUUUUCUUCAUUAAUAUUGA-CCAAAUUCUUUGGGCCAAUUG----GUCAGUGCAGGCCCUAAAUGGAAACCGAUAAGA
...(((..((((.....)))).)))........(((((.((((((((.(((.......)))-...........(((((.(((.----...)))...))))).....)))))))).))))) ( -29.40)
>consensus
GUCAUCCGCCGGUUUUCUCCGA________AUAUUUCGGUUGGAU____________U_GA_UUGGAUUCUUUCGGCCAAUUGCCGUGUCGCUUUUGGCCGCAAAUGGAAACCGGUAAGA
.......((((((((((.................(((((.......................)))))......(((((((..((......))..))))))).....)))))))))).... (-19.32 = -19.80 +   0.48)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:21 2006