Locus 3638

Sequence ID X_DroMel_CAF1
Location 9,726,949 – 9,727,052
Length 103
Max. P 0.771947
window5951

overview

Window 1

Location 9,726,949 – 9,727,052
Length 103
Sequences 5
Columns 103
Reading direction forward
Mean pairwise identity 76.50
Mean single sequence MFE -14.56
Consensus MFE -4.67
Energy contribution -5.75
Covariance contribution 1.08
Combinations/Pair 1.14
Mean z-score -1.94
Structure conservation index 0.32
SVM decision value 0.53
SVM RNA-class probability 0.771947
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9726949 103 + 22224390
CUCUAUUACAUUCUGGAGAAUUCUCCGGCUCUCCGCUACCUCCCGCCUUUUACAUUUCCCAAGUCUCAUUUUUUCUAGGCCUCUCUCUUCGCUCGCCGAAAAU
..........(((.((((....))))(((....((.........((((............................)))).........))...))))))... ( -14.06)
>DroPse_CAF1 28904 89 + 1
CUCUUUCACAUUCUGGAGAAUUCUCC-CUUCUCCAUUUCCAUUUGCACUUAACAUUUGCC--------UUCUUUC---GCUCCUCAGUU--CUGGUUGGAAAU
.............(((((((......-.)))))))((((((...(((.........))).--------.......---...((......--..)).)))))). ( -14.00)
>DroSec_CAF1 19368 103 + 1
CUCUUAUACAUUGUUAAGAAUUCUUUGUCUCUCCGGUCCCUUCCGCCUUUUCCAUUUCCCCAGUCUCAUUUUUCCUAGGCCUCUCUCUUCGCUCGACGAAAAU
.(((((........)))))....((((((.....((......))((((............................))))..............))))))... ( -12.59)
>DroEre_CAF1 16169 102 + 1
CUCUAUUACAUUCUGGAGAAUUCUCAGUCUAUCCGGUCCCUCUCGCCUUUC-CAUUUCCCCAGUCUCAUUUUCUCCAGGCCUCUCUUUUCGCUCGCCGAAAAU
...........(((((((((.....((.((....((...............-.....))..)).))....)))))))))......((((((.....)))))). ( -14.95)
>DroYak_CAF1 13303 103 + 1
CUCUAUUACAUUCUGGAGAAUUCUCUGGCUCUCCGGUCCCGCUCGCCUUUCCCAUUUCCCCAGUCUCAGUUUCUCUAGGCCUCUCUUUUCGCUCGCCGAAAAU
...........(((((((((....((((..((..((.....................))..))..)))).)))))))))......((((((.....)))))). ( -17.20)
>consensus
CUCUAUUACAUUCUGGAGAAUUCUCCGGCUCUCCGGUCCCUCUCGCCUUUCACAUUUCCCCAGUCUCAUUUUUUCUAGGCCUCUCUCUUCGCUCGCCGAAAAU
.............((((((..........)))))).........((((............................)))).......((((.....))))... ( -4.67 =  -5.75 +   1.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:20 2006