Locus 3637

Sequence ID X_DroMel_CAF1
Location 9,718,822 – 9,718,923
Length 101
Max. P 0.500000
window5950

overview

Window 0

Location 9,718,822 – 9,718,923
Length 101
Sequences 5
Columns 101
Reading direction forward
Mean pairwise identity 93.86
Mean single sequence MFE -18.31
Consensus MFE -17.12
Energy contribution -16.92
Covariance contribution -0.20
Combinations/Pair 1.15
Mean z-score -1.04
Structure conservation index 0.93
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9718822 101 + 22224390
AACAGACUUAAAAAUAAACACGCAUUUAAAUUUAACUUUGCUCAGUGGGAGAGUCCAGUUUUAGACACGCUAAGUGGGUAAACAAGUUGGAAUUAGCAAAA
.....................((...(((.((((((((((((((.(.((.(.(((........))).).)).).))))))...)))))))).))))).... ( -16.60)
>DroSec_CAF1 6837 101 + 1
AACAGACUUAAAAAUAAACACGCAUUUAAAUUUAACUUUGCCCAGUGGGGGAGUCCAAAUUUAGACACGCUAAGUGGGUAAACAAGUUGGAAUUAGCAAAA
.....................((...(((.((((((((((((((.(.((.(.(((........))).).)).).))))))...)))))))).))))).... ( -21.20)
>DroSim_CAF1 6029 100 + 1
AACAGACUUAAAAAUAAACACGCAUUUAAAUUUAACUUUGCCCAGUGGGGGAGUCCAAUUUUAGACACGCUAAGUG-GUAAACAAGUUGGAAUUAGCAAAA
.....................((............((((.((....)).))))((((((((....(((.....)))-......))))))))....)).... ( -17.10)
>DroEre_CAF1 6475 101 + 1
AACAGACUUCAAAAUAAGCACGCAUUUCAAUUUAACUUUGCUUAGUGGGGCAGUCCAAUUUUAGACACGCUAAGUGGGUAAACAAGUUAAAAUUAGCAAAA
....(.(((((...((((((..................)))))).)))))).(((........)))..(((((.(((.(.....).)))...))))).... ( -15.17)
>DroYak_CAF1 5237 101 + 1
AACAGACUUAAAAAUAAACACGCAUUUAAAUUUAACUUUGCCCAGUGGGGGAGUCCAAUAUCAGACACGCUAAGUGGGUAAACAAGUUAAAAUUAGCAAAA
.....................((...(((.((((((((((((((.(.((.(.(((........))).).)).).))))))...)))))))).))))).... ( -21.50)
>consensus
AACAGACUUAAAAAUAAACACGCAUUUAAAUUUAACUUUGCCCAGUGGGGGAGUCCAAUUUUAGACACGCUAAGUGGGUAAACAAGUUGGAAUUAGCAAAA
.....................((...(((.((((((((((((((.(.((.(.(((........))).).)).).))))))...)))))))).))))).... (-17.12 = -16.92 +  -0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:19 2006