Locus 3632

Sequence ID X_DroMel_CAF1
Location 9,706,830 – 9,706,929
Length 99
Max. P 0.932686
window5944

overview

Window 4

Location 9,706,830 – 9,706,929
Length 99
Sequences 3
Columns 105
Reading direction forward
Mean pairwise identity 89.07
Mean single sequence MFE -23.58
Consensus MFE -21.29
Energy contribution -21.07
Covariance contribution -0.22
Combinations/Pair 1.06
Mean z-score -2.33
Structure conservation index 0.90
SVM decision value 1.22
SVM RNA-class probability 0.932686
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9706830 99 + 22224390
AACCCCCUUUCUCCAUUGAAUCCCCACCACAUACCCACCCACCGCUGGCACUGGCACC---ACCCCUCC---CUGCGGUGCCCACUUAAAUGGCAAGUGGUGCGG
........(((......)))..((((((((.........((((((.((....((....---.))....)---).)))))).(((......)))...)))))).)) ( -26.80)
>DroSec_CAF1 48312 101 + 1
AACCCCCUCUCACCGUUGAAUCCCCACCACAUACCC----ACCACUGGCACUGGCACCCACACCCCUCCCACCCGCAGUGCCCACUCAAAUGGCAAGUGGUGCGG
......................((((((((....((----(.....(((((((......................)))))))........)))...)))))).)) ( -21.97)
>DroSim_CAF1 22722 101 + 1
AACCCCCUCUCACCAUUGAAUCCCCACCACAUACCC----ACCACUGGCACUGGCACCCACACCCCUCCCACCCGCAGUGCCCACUCAAAUGGCAAGUGGUGCGG
......................((((((((....((----(.....(((((((......................)))))))........)))...)))))).)) ( -21.97)
>consensus
AACCCCCUCUCACCAUUGAAUCCCCACCACAUACCC____ACCACUGGCACUGGCACCCACACCCCUCCCACCCGCAGUGCCCACUCAAAUGGCAAGUGGUGCGG
......................((((((((...((...........(((((((......................))))))).........))...)))))).)) (-21.29 = -21.07 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:13 2006