Locus 3631

Sequence ID X_DroMel_CAF1
Location 9,705,041 – 9,705,144
Length 103
Max. P 0.999776
window5943

overview

Window 3

Location 9,705,041 – 9,705,144
Length 103
Sequences 5
Columns 103
Reading direction reverse
Mean pairwise identity 98.45
Mean single sequence MFE -23.80
Consensus MFE -23.80
Energy contribution -23.80
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.54
Structure conservation index 1.00
SVM decision value 4.05
SVM RNA-class probability 0.999776
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9705041 103 - 22224390
AUCCAAGCGAUUGCCAAUUGCAUAAAAGCCAAUUUGCCAUGGCUGCAAAAUAGCCGCAAGUGGCAAUUUAUUAACACAUUCAACACAAGCACUAGCACACCGA
........((((((((.((((.....(((((........)))))((......)).)))).))))))))....................((....))....... ( -23.80)
>DroSec_CAF1 46541 103 - 1
AUCCAAGCGAUUGCCAAUUGCAUAAAAGCCAAUUUGCCAUGGCUGCAAAAUAGCCGCAAGUGGCAAUUUAUUAACACAUUCGACACAAGCACUAGCACACCGA
........((((((((.((((.....(((((........)))))((......)).)))).))))))))....................((....))....... ( -23.80)
>DroSim_CAF1 20953 103 - 1
AUCCAAGCGAUUGCCAAUUGCAUAAAAGCCAAUUUGCCAUGGCUGCAAAAUAGCCGCAAGUGGCAAUUUAUUAACACAUUCGACACAAGCACUAGCACACCGA
........((((((((.((((.....(((((........)))))((......)).)))).))))))))....................((....))....... ( -23.80)
>DroEre_CAF1 23865 103 - 1
AUCCAAGCGAUUGCCAAUUGCAUAAAAGCCAAUUUGCCAUGGCUGCAAAAUAGCCGCAAGUGGCAAUUUAUUAACACAUUCAACUCAAGCACCAGCACACCGA
........((((((((.((((.....(((((........)))))((......)).)))).))))))))....................((....))....... ( -23.80)
>DroYak_CAF1 23035 103 - 1
AUCCAAGCGAUUGCCAAUUGCAUAAAAGCCAAUUUGCCAUGGCUGCAAAAUAGCCGCAAGUGGCAAUUUAUUAACACAUUCAACUCAAGCACUAGCACACCGA
........((((((((.((((.....(((((........)))))((......)).)))).))))))))....................((....))....... ( -23.80)
>consensus
AUCCAAGCGAUUGCCAAUUGCAUAAAAGCCAAUUUGCCAUGGCUGCAAAAUAGCCGCAAGUGGCAAUUUAUUAACACAUUCAACACAAGCACUAGCACACCGA
........((((((((.((((.....(((((........)))))((......)).)))).))))))))....................((....))....... (-23.80 = -23.80 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:12 2006