| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,703,969 – 9,704,063 |
| Length | 94 |
| Max. P | 0.949507 |
| Location | 9,703,969 – 9,704,063 |
|---|---|
| Length | 94 |
| Sequences | 5 |
| Columns | 114 |
| Reading direction | reverse |
| Mean pairwise identity | 87.55 |
| Mean single sequence MFE | -32.02 |
| Consensus MFE | -29.18 |
| Energy contribution | -28.90 |
| Covariance contribution | -0.28 |
| Combinations/Pair | 1.11 |
| Mean z-score | -1.77 |
| Structure conservation index | 0.91 |
| SVM decision value | 1.39 |
| SVM RNA-class probability | 0.949507 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9703969 94 - 22224390 AAUCGAUUUCUAUCUGGCAGCGCAUAAAUCGCUUUGCCACAUGCCCCUGGUCGGCCGCCUUAACCCUUGGCUGGCCCACUGUGUCGAAACGACC-------------------- ..(((.(((((((.((((((.((.......)).)))))).))).....(((.(((((((.........))).)))).))).....)))))))..-------------------- ( -29.00) >DroSec_CAF1 45458 94 - 1 AAUCGAUUUCUAUCUGGCAGCGCAUAAAUCGCUUUGCCACAUGCCCCUGGUCGGCCGCCUUAACCCUUGGCUGGCCCACUGUGUCGAAACGACC-------------------- ..(((.(((((((.((((((.((.......)).)))))).))).....(((.(((((((.........))).)))).))).....)))))))..-------------------- ( -29.00) >DroSim_CAF1 19868 94 - 1 AAUCGAUUUCUAUCUGGCAGCGCAUAAAUCGCUUUGCCACAUGCCCCUGGUCGGCCGCCUUAACCCUUGGCUGGCCCACUGUGUCGAAACGACC-------------------- ..(((.(((((((.((((((.((.......)).)))))).))).....(((.(((((((.........))).)))).))).....)))))))..-------------------- ( -29.00) >DroEre_CAF1 22805 108 - 1 AAUCGAUUUCUAUCUGGCAGCGCAUAAAUCGCU-UGCCACAUGCCCCUGGUCGGCCGCCUUAACCCUUGGCUGGCCCGCUGUGUCGAAACGAC-CUGCUGCUGCUGCC----CC ....(((....))).(((((((((((..(((.(-((.((((.((....(((((((((..........))))))))).)))))).)))..))).-.)).))).))))))----.. ( -37.00) >DroYak_CAF1 21963 114 - 1 AAUCGAUUUCUAUCUGGCAGCGCAUAAAUCGCUUUGCCACAUGCCCCUGGUCGGCCGUCUUAACCCUUGGCUGGCCCACCGUGUCGAAACGACCCUGCUGCUGCUGCUGCAACC ..(((.((((.....(((((.((.......)).)))))(((((.....(((((((((..........)))))))))...))))).)))))))...(((.((....)).)))... ( -36.10) >consensus AAUCGAUUUCUAUCUGGCAGCGCAUAAAUCGCUUUGCCACAUGCCCCUGGUCGGCCGCCUUAACCCUUGGCUGGCCCACUGUGUCGAAACGACC____________________ ..(((.(((((((.((((((.((.......)).)))))).))).....(((.(((((((.........))).)))).))).....)))))))...................... (-29.18 = -28.90 + -0.28)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:11 2006