Locus 363

Sequence ID X_DroMel_CAF1
Location 1,109,168 – 1,109,273
Length 105
Max. P 0.935265
window545

overview

Window 5

Location 1,109,168 – 1,109,273
Length 105
Sequences 5
Columns 107
Reading direction forward
Mean pairwise identity 71.77
Mean single sequence MFE -17.83
Consensus MFE -14.10
Energy contribution -14.30
Covariance contribution 0.20
Combinations/Pair 1.00
Mean z-score -0.92
Structure conservation index 0.79
SVM decision value 1.24
SVM RNA-class probability 0.935265
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1109168 105 + 22224390
CGUGACACGCGAUAAAGCUUACAAAUCACGAUUGAUCGUGAUUGAUCACGCACCCGAAAAGCCGC--CCCACACCCCUCCUUUCCACUCCUCGCGAACAUACUCUCA
.(((...(((((....((.....((((((((....))))))))......))...((......)).--.......................)))))..)))....... ( -17.90)
>DroSec_CAF1 5951 82 + 1
CGUGACACGCGAUCGAGCUUACAAAUCACGAUUGAUCGUGUUUGAUCACGCACCCGAAAAACC-------------------------CCCCGCGCACAUACUCGCA
(((((.((((((((((...............))))))))))....))))).............-------------------------....(((........))). ( -18.76)
>DroSim_CAF1 5997 82 + 1
CGUGACACGCGAUCGAGCUUACAAAUCACGAUUGAUCGUGAUUGAUCACGCACCCGAAAAGCC-------------------------CCCCGCGCACAUACUCGCA
.(((...((((...(.((((...((((((((....)))))))).....((....))..)))))-------------------------...)))))))......... ( -18.90)
>DroEre_CAF1 6500 97 + 1
CGUGACACGCGAUCGAGCUUACAAAUCACGAUUGAACGUGAUUGAUCACGCACCCGAAACGCCACAGCCCCCACCCCCACCUACCACCCUU----------CUCGCA
........(((((((.((.....(((((((......)))))))......))...)))...((....)).......................----------.)))). ( -15.90)
>DroYak_CAF1 6091 94 + 1
CGUGACACGCGAUCGAGCUUACAAAUCACGAUUGAUCGUGAUUGAUCACGCACCCGAGA-GCCAAACACCCCCCUCCACCCCUCCACCCCU------------CGCA
.(((....((..(((.((.....((((((((....))))))))......))...)))..-))....)))......................------------.... ( -17.70)
>consensus
CGUGACACGCGAUCGAGCUUACAAAUCACGAUUGAUCGUGAUUGAUCACGCACCCGAAAAGCC_____CC_C_C_CC__C___CCAC_CCUCGCG_ACAUACUCGCA
(((((...((......)).....(((((((......)))))))..)))))......................................................... (-14.10 = -14.30 +   0.20)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:36 2006