Locus 3626

Sequence ID X_DroMel_CAF1
Location 9,702,628 – 9,702,739
Length 111
Max. P 0.646175
window5936

overview

Window 6

Location 9,702,628 – 9,702,739
Length 111
Sequences 5
Columns 120
Reading direction reverse
Mean pairwise identity 87.43
Mean single sequence MFE -35.70
Consensus MFE -22.72
Energy contribution -23.72
Covariance contribution 1.00
Combinations/Pair 1.10
Mean z-score -2.55
Structure conservation index 0.64
SVM decision value 0.23
SVM RNA-class probability 0.646175
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9702628 111 - 22224390
AACUGGGGUCCAUUUGCUUUGUGGUCCCCAGAGGAAGUCCGCCCUGAUCGAAAGUGGAAAGUGGAAGU--------GCGGGCUAAAAUAGCA-AUACCACAAACUAAUCAUCCAAGAAAA
..((((((.((((.......)))).)))))).(((..(((((...........)))))..((((...(--------((...........)))-...))))..........)))....... ( -35.20)
>DroSec_CAF1 44104 111 - 1
AACUGGGGUCCAUUUGCUUUGUGGUCCCCAAAGGAAGUCCGUCCUGAUCGAAAGUGGAAAGUGGUAGU--------GCGGACUAAAAUGGCA-AUACCACAAACUAAUCACCCAAGAAAA
...(((((.((((.......)))).)))))..((.......(((....(....).)))..((((((.(--------((...........)))-.))))))...........))....... ( -32.50)
>DroSim_CAF1 18516 111 - 1
AACUGGGGUCCAUUUGCUUUGUGGUCCCCAAAGGAAGUCCGUCCUGAUCGAAAGUGGAAUGUGGUAGU--------GCGGACUAAAAUGGCA-AUACCACAAACUAAUCACCCAAGAAAA
...(((((.((((.......)))).)))))..((.......(((....(....).))).(((((((.(--------((...........)))-.)))))))..........))....... ( -33.30)
>DroEre_CAF1 21484 105 - 1
AACUGGGGUCCAUUUGCUUUGUGGUCCCCAGAGGAAGUGCGACCCGAUCGAAAGUGGACAGC--------------GCAGGCUGGAAUUGCA-AUACCACAAACUAAUCAGCCAAGAAAA
..((((((.((((.......)))).)))))).....((((...(((..(....))))...))--------------)).((((((..(((..-......))).....))))))....... ( -35.10)
>DroYak_CAF1 20414 120 - 1
AACUGGGGUCCAUUUGCUUUGUGGUCCCCAGAGGAUGUCCGCCCUGAUCGAAAGUGGAAGGUGGUGGUGGUAAGUUGCGGGGUAAAAUUGCAAAUACCACAAACUAAUCACCCAAGAAAA
..((((((.((((.......)))).)))))).((.((.(((((.....(....).....)))))..((((((..((((((.......)))))).))))))........)).))....... ( -42.40)
>consensus
AACUGGGGUCCAUUUGCUUUGUGGUCCCCAGAGGAAGUCCGCCCUGAUCGAAAGUGGAAAGUGGUAGU________GCGGGCUAAAAUGGCA_AUACCACAAACUAAUCACCCAAGAAAA
..((((((.((((.......)))).))))))....(((((((((....(....).))...................)))))))..................................... (-22.72 = -23.72 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:06 2006