Locus 3624

Sequence ID X_DroMel_CAF1
Location 9,698,691 – 9,698,781
Length 90
Max. P 0.584446
window5933

overview

Window 3

Location 9,698,691 – 9,698,781
Length 90
Sequences 3
Columns 90
Reading direction reverse
Mean pairwise identity 82.96
Mean single sequence MFE -17.37
Consensus MFE -14.35
Energy contribution -13.80
Covariance contribution -0.55
Combinations/Pair 1.14
Mean z-score -1.45
Structure conservation index 0.83
SVM decision value 0.10
SVM RNA-class probability 0.584446
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9698691 90 - 22224390
UUAAAGUGGAAAUUUUAUGUGAGUUGGUUAUUUAAUGGCCAACGAAAAUGGUUAUAACUUUAAGCAUACAAUAGGCAUUCAAGUGGCACC
.((((((....))))))((((.(((((((((...))))))))).....((.(((......))).))))))...(.(((....))).)... ( -17.80)
>DroSec_CAF1 40215 90 - 1
UUGAAGUGGAAAUUGUAUGUGAGUUUGUUAUUUAAUGGCCAACGAAAAUGGUUAAGACUUUAAGCAUACAAUAGGCAUUCAAGAUGCACC
.......((..(((((((((((((((.........((((((.......))))))))))))...)))))))))..(((((...))))).)) ( -18.80)
>DroSim_CAF1 14672 75 - 1
UUGAAGUGGAAAUUGUAUGUGAGUUUGUUAUUAAAUAGCCAACGAAAAUGGUUAAGACUUUAAGCAUACAAUAGG---------------
...........(((((((((((((((.........((((((.......))))))))))))...)))))))))...--------------- ( -15.50)
>consensus
UUGAAGUGGAAAUUGUAUGUGAGUUUGUUAUUUAAUGGCCAACGAAAAUGGUUAAGACUUUAAGCAUACAAUAGGCAUUCAAG__GCACC
...........(((((((((((((((.........((((((.......))))))))))))...))))))))).................. (-14.35 = -13.80 +  -0.55)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:04:03 2006