| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,682,387 – 9,682,484 |
| Length | 97 |
| Max. P | 0.627723 |
| Location | 9,682,387 – 9,682,484 |
|---|---|
| Length | 97 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 78.32 |
| Mean single sequence MFE | -21.60 |
| Consensus MFE | -17.23 |
| Energy contribution | -17.23 |
| Covariance contribution | 0.00 |
| Combinations/Pair | 1.12 |
| Mean z-score | -0.97 |
| Structure conservation index | 0.80 |
| SVM decision value | 0.19 |
| SVM RNA-class probability | 0.627723 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9682387 97 + 22224390 -------------GCCCGCUCAAAUAUUAACACAGAUAAACGAGCGGAAGUGUAUUUGAUCAGCAUUUAAUGCA----GCAAAUGUCGAUUUGUCGCUGA-----CAAAAAACAAAA-AA -------------..((((((...((((......))))...))))))..((...((((.(((((.......(((----.....))).((....)))))))-----))))..))....-.. ( -21.60) >DroPse_CAF1 20106 103 + 1 CGUGCCCCCACAAGCCUGCUCAAAUAUUUACACAGAUAAACGAGCGGAAGUGUAUUUGAUCAGCAUUUAACGUA----GCAAAUGUCGAUUUGUCGCUGA-----CAAAAAA-------- .........(((...((((((...(((((....)))))...))))))...))).((((.(((((.....((((.----....)))).((....)))))))-----))))...-------- ( -20.40) >DroGri_CAF1 890 104 + 1 -------------GACUGCUCAAAUAUUUACACAGAUAAACGAGCGGAAGUGUAUUUGAUCAGCAGUUAACGUACUUGCCUAAUGCCGAUUUGUCGCUGUAGUCUCAACAUACCAA---G -------------((((((.(((((.......((((((.....((....)).))))))....(((((......)).))).........))))).....))))))............---. ( -19.10) >DroWil_CAF1 730 96 + 1 ------------UGCCUGCUCAAAUAUUUAUACAGAUAAACGAGCGGAAGUGUAUUUGAUCAGCAUUUAACGUA----GCAAAUGUCGAUUUGUCGCAAA-GUCGCAAAAAAC------- ------------(((((((((...(((((....)))))...))))))..(((.....((((.((((((......----..)))))).))))...)))...-...)))......------- ( -20.50) >DroAna_CAF1 2579 111 + 1 CCGGACGCCCCUGGUCCGUUCAAAUAUUUACCCAGAUAAACGAGCGGAAGUGUAUUUGAUCAGCAUUUAAUGCA----GCAAAUGUCGAUUUGUCGCUGA-----CAAAAAACACAAAAA ((((......))))(((((((...(((((....)))))...))))))).((((.(((..(((((.......(((----.....))).((....)))))))-----..))).))))..... ( -27.60) >DroPer_CAF1 23985 102 + 1 CGUGCC-CCACAAGCCUGCUCAAAUAUUUACACAGAUAAACGAGCGGAAGUGUAUUUGAUCAGCAUUUAACGUA----GCAAAUGUCGAUUUGUCGCUGA-----CAAAAAA-------- ......-..(((...((((((...(((((....)))))...))))))...))).((((.(((((.....((((.----....)))).((....)))))))-----))))...-------- ( -20.40) >consensus _____________GCCUGCUCAAAUAUUUACACAGAUAAACGAGCGGAAGUGUAUUUGAUCAGCAUUUAACGUA____GCAAAUGUCGAUUUGUCGCUGA_____CAAAAAAC_______ ...............((((((...((((......))))...)))))).((((.....((((.((((((............)))))).))))...))))...................... (-17.23 = -17.23 + 0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:57 2006