Locus 362

Sequence ID X_DroMel_CAF1
Location 1,103,439 – 1,103,547
Length 108
Max. P 0.576331
window544

overview

Window 4

Location 1,103,439 – 1,103,547
Length 108
Sequences 5
Columns 114
Reading direction forward
Mean pairwise identity 90.67
Mean single sequence MFE -21.93
Consensus MFE -17.58
Energy contribution -18.10
Covariance contribution 0.52
Combinations/Pair 1.11
Mean z-score -1.41
Structure conservation index 0.80
SVM decision value 0.09
SVM RNA-class probability 0.576331
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1103439 108 + 22224390
AUCCAUUCUUCAGCAGCAGUAAUUGCUCGUCAUCGUAGGGCGUCAUCACGCCCACUCCGACUCCCACUCCCACACCAAC------UCCGACGCCAACGCCCACUCCGGUCCCAA
............(((((((...))))).(((...((.((((((....))))))))...)))..................------......))....(((......)))..... ( -18.60)
>DroSec_CAF1 333 108 + 1
AUCCAUUCUUCAGCAGCAGCAACUGCUCGUCAUCGUAGGGCGUCAUCACGCCCACUCCGACUCCCACUCCCACACCAAC------UCCGACGCCAACGCCCACUCCGGCCCCAA
............(((((((...))))).(((...((.((((((....))))))))...)))..................------......))....(((......)))..... ( -22.70)
>DroSim_CAF1 335 108 + 1
AUCCAUUCUUCAGCAGCAGCAAAUGCUCGUCAUCGUAGGGCGUCAUCACGCCCACUCCGACUCCCACUCCCACACCAAC------UCCGACGCCAACGCCCACUCCGGCCCCAA
............((((((.....)))).(((...((.((((((....))))))))...)))..................------......))....(((......)))..... ( -21.80)
>DroEre_CAF1 336 108 + 1
AUCCGUUUUUCAGCAGCAGCAACUGCUCGUCAUCGUAGGGGGUCAUCACGCCCACGCCCACUCCGACUCCCACACCAAC------UCCAACUCCCACGCCCACUCCGGCCCCAA
...((......(((((......)))))......))..(((((((.....((....)).......)))))))........------............(((......)))..... ( -21.00)
>DroYak_CAF1 368 114 + 1
AUCCGUUCUUCAGCAGCAGCAGCUGCUCGUCAUCGUAGGGGGUCAUCACGCCCACUCCGACUCCCACUCCCACUCCAACGCCCACGCCAACUCCAACGCCCACUCCGGCUCCUA
...((((....((((((....)))))).......((.(((((((..............))))))))).........)))).................(((......)))..... ( -25.54)
>consensus
AUCCAUUCUUCAGCAGCAGCAACUGCUCGUCAUCGUAGGGCGUCAUCACGCCCACUCCGACUCCCACUCCCACACCAAC______UCCGACGCCAACGCCCACUCCGGCCCCAA
...........(((((......))))).(((...((.((((((....))))))))...)))....................................(((......)))..... (-17.58 = -18.10 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:35 2006