Locus 3617

Sequence ID X_DroMel_CAF1
Location 9,673,312 – 9,673,432
Length 120
Max. P 0.997943
window5920

overview

Window 0

Location 9,673,312 – 9,673,432
Length 120
Sequences 3
Columns 120
Reading direction forward
Mean pairwise identity 63.89
Mean single sequence MFE -21.22
Consensus MFE -12.97
Energy contribution -12.23
Covariance contribution -0.74
Combinations/Pair 1.20
Mean z-score -1.75
Structure conservation index 0.61
SVM decision value 2.97
SVM RNA-class probability 0.997943
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9673312 120 + 22224390
UGCAUUAUUUAUCAAUUUGCUUUUGAAAUUUAAAGUAUUACACAAAUUGUAUUCAAAAGUUAACACUGCGUAUACGUGAUAUUCUAAUGAUCACUUUCGGCAACGGCACGUAUACUUUAU
.(((..............(((((((((...........((((.....)))))))))))))......)))(((((((((....((....))......(((....))))))))))))..... ( -22.65)
>DroEre_CAF1 15808 90 + 1
UGCAUUAU------------------------------UACACAGCUUGUAUUAAAAAGUUAGCAGUGCGUAUGCGUGAUAUCUUUGUGAUUGUUUUCGGCAACGGUACGUAUACUUUAU
.(((((.(------------------------------((....((((........))))))).)))))(((((((((..(((.....))).....(((....))))))))))))..... ( -20.40)
>DroYak_CAF1 20041 108 + 1
UGCAUUAUGUAUCAAUUUACUUUUGUAACUUGAAAAAUAACACAAAUUGUUUUAAAAAGUUAACAGUGCGUAUACGUGAUAUCUUCAUAAUUGC------------UACGUAUACUUAAC
.(((((..(((......))).....((((((..(((((((......)))))))...))))))..)))))(((((((((.((..........)).------------)))))))))..... ( -20.60)
>consensus
UGCAUUAU_UAUCAAUUU_CUUUUG_AA_UU_AA__AUUACACAAAUUGUAUUAAAAAGUUAACAGUGCGUAUACGUGAUAUCUUAAUGAUUGCUUUCGGCAACGGUACGUAUACUUUAU
.(((((................................((((.....)))).......(....))))))(((((((((.(((....))).......(((....))))))))))))..... (-12.97 = -12.23 +  -0.74)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:51 2006