Locus 3615

Sequence ID X_DroMel_CAF1
Location 9,672,384 – 9,672,480
Length 96
Max. P 0.904885
window5917

overview

Window 7

Location 9,672,384 – 9,672,480
Length 96
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 80.09
Mean single sequence MFE -23.62
Consensus MFE -15.12
Energy contribution -16.12
Covariance contribution 1.00
Combinations/Pair 1.00
Mean z-score -2.15
Structure conservation index 0.64
SVM decision value 1.04
SVM RNA-class probability 0.904885
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9672384 96 - 22224390
C-----------UCCUCGGCUGCCACUCCCAUUGCCCUUCGCCUGGCUAAUGGUAAAUGCCAUUUCAAUUACGUACACAGUACUAAAAUUUUAUGCGGCCAGUCAAC-------------
.-----------.....((((((.....((((((((........))).)))))...................((((...))))...........)))))).......------------- ( -21.80)
>DroAna_CAF1 35871 101 - 1
-------------------CAGCCACUCCCUUUGCCCUUCGCUCGGCUAAUGGUAAAUGCCAUUUCAAUUACGUACACAGUACUAAAAUUUUAUGCGGCCAGUCGACCGGCCAGUGGCUU
-------------------.(((((((......(((..(((((.((((((((((....))))))........((((...)))).............)))))).)))..))).))))))). ( -30.10)
>DroEre_CAF1 14916 95 - 1
CC------------UUCAGCUGCCACUCCCAUUGCCCUUCGCCUGGCUAAUGGUAAAUGCCAUUUCAAUUACGUACACAGUACUAAAAUUUAAUGCGGCCAGUCAAC-------------
..------------....((((((....((((((((........))).))))).....((.(((........((((...))))........))))))).))))....------------- ( -17.79)
>DroYak_CAF1 19167 107 - 1
CCCCCCCCCCCCUCCUCGGCUGCCGCUCCCAUCGCCCUUCGCCAGGCUAAUGGUAAAUGCCAUUUCAAUUACGUACACAGUACUAAAAUUUUAUGCGGCCAGUCAAC-------------
.................(((((((((.......(((........))).((((((....))))))........((((...))))...........)))).)))))...------------- ( -24.80)
>consensus
C_____________CUCGGCUGCCACUCCCAUUGCCCUUCGCCUGGCUAAUGGUAAAUGCCAUUUCAAUUACGUACACAGUACUAAAAUUUUAUGCGGCCAGUCAAC_____________
.................((((((..........(((........))).((((((....))))))........((((...))))...........)))))).................... (-15.12 = -16.12 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:49 2006