Locus 361

Sequence ID X_DroMel_CAF1
Location 1,101,492 – 1,101,595
Length 103
Max. P 0.558437
window543

overview

Window 3

Location 1,101,492 – 1,101,595
Length 103
Sequences 4
Columns 103
Reading direction reverse
Mean pairwise identity 96.59
Mean single sequence MFE -19.48
Consensus MFE -16.62
Energy contribution -17.00
Covariance contribution 0.38
Combinations/Pair 1.03
Mean z-score -1.82
Structure conservation index 0.85
SVM decision value 0.05
SVM RNA-class probability 0.558437
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1101492 103 - 22224390
AACUUAUAUAUUUGUGUGUUUAUUGCUUGAUCAACGAGAUAUAUACAUAAUUAUACACAGAUAAAGCAGUUAAUUAUAUAUACAAAGUGUGUGUACAAACAGC
........(((((((((((....((..(((((.....))).))..)).....)))))))))))..((.(((...(((((((((...)))))))))..))).)) ( -19.10)
>DroSec_CAF1 7460 100 - 1
AACUUAU--AUUUGUGUGUUUAUUGCUUGAUUAACGAGAUAUAUACAUAAUUAUACACAGAUAAAGCAGUUAAUUAUAUAUACA-AGUGUGUGUACAAACAGC
......(--((((((((((.(((..((((.....))))..))).........)))))))))))..((.(((...((((((((..-..))))))))..))).)) ( -17.70)
>DroEre_CAF1 7482 100 - 1
AACUUAUAUAUUUGUGUGUUUAUUGCUUGAUCAACG--AUAUAUACAUAAUUAUACACAGAUAAAGCAGUUAAUUAUAUAUACA-AGUGUGUGUACAAACAGC
....(((((((((((((((..(((((((.(((...(--.((((........)))))...))).))))))).......)))))))-)))))))).......... ( -21.10)
>DroYak_CAF1 7521 102 - 1
AACUUAUAUAUUUGUGUGUUUAUUGCUUGAUCAACGAGAUAUAUACAUAAUUAUACACAGAUAAAGCAGUUAAUUAUAUAUACA-AGUGUGUGUAAAAACAGC
....(((((((((((((((..(((((((.(((...(.(.((((........))))).).))).))))))).......)))))))-)))))))).......... ( -20.00)
>consensus
AACUUAUAUAUUUGUGUGUUUAUUGCUUGAUCAACGAGAUAUAUACAUAAUUAUACACAGAUAAAGCAGUUAAUUAUAUAUACA_AGUGUGUGUACAAACAGC
........(((((((((((....((..(((((.....))).))..)).....)))))))))))..((.(((...(((((((((...)))))))))..))).)) (-16.62 = -17.00 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:34 2006