| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,661,837 – 9,661,934 |
| Length | 97 |
| Max. P | 0.775790 |
| Location | 9,661,837 – 9,661,934 |
|---|---|
| Length | 97 |
| Sequences | 3 |
| Columns | 98 |
| Reading direction | forward |
| Mean pairwise identity | 87.37 |
| Mean single sequence MFE | -32.10 |
| Consensus MFE | -24.45 |
| Energy contribution | -24.90 |
| Covariance contribution | 0.45 |
| Combinations/Pair | 1.08 |
| Mean z-score | -2.42 |
| Structure conservation index | 0.76 |
| SVM decision value | 0.54 |
| SVM RNA-class probability | 0.775790 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9661837 97 + 22224390 GCUGCGGCGGGUUGAAUGUGGUGGUGAUGGUUGAGCGGGUGGUGACUGCUCAUGCAUGACCAAUAAUCCUC-GAAUGGAGACAUAAAACAAUGGCCGA ....((((((((((....((((.(((.....(((((((.......)))))))..))).)))).))))))..-..(((....))).........)))). ( -35.90) >DroSim_CAF1 11853 97 + 1 GCUGGGGCGGGGUGAAUGUGGUGGUGAUGGUUGAGAGGAGGCUGACUCCUCAUGCAUGACCAAUAAUCCUC-GAAUGGAGACAUAAAACAAUGGCCGA .....(((((((......((((.(((........((((((.....))))))...))).)))).....))))-..(((....))).........))).. ( -32.50) >DroEre_CAF1 4266 93 + 1 U-----AUGGGCUGAAUGUGCUGGUGAUGGUUGAGUGGGUGGUGACUGCUCAUGCAUGACCAAUAAUCCUUGGAAUGGAGACAUAAAACAAUGGCCGA .-----...((((...(((..((((.(((..((((..(.......)..))))..))).))))............(((....)))...)))..)))).. ( -27.90) >consensus GCUG_GGCGGGCUGAAUGUGGUGGUGAUGGUUGAGAGGGUGGUGACUGCUCAUGCAUGACCAAUAAUCCUC_GAAUGGAGACAUAAAACAAUGGCCGA .........((((...(((..((((.(((..(((((((.......)))))))..))).))))............(((....)))...)))..)))).. (-24.45 = -24.90 + 0.45)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:35 2006