Locus 3605

Sequence ID X_DroMel_CAF1
Location 9,658,848 – 9,658,948
Length 100
Max. P 0.958644
window5900

overview

Window 0

Location 9,658,848 – 9,658,948
Length 100
Sequences 4
Columns 103
Reading direction reverse
Mean pairwise identity 86.76
Mean single sequence MFE -30.25
Consensus MFE -26.52
Energy contribution -25.78
Covariance contribution -0.75
Combinations/Pair 1.19
Mean z-score -2.14
Structure conservation index 0.88
SVM decision value 1.49
SVM RNA-class probability 0.958644
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9658848 100 - 22224390
GCUCUCAUGCC--GUUUUCAACGUGCUGAAUUUUUCGUGCGGCCGUCGGCUAUAUAGUUGUCUAUAUAUCGUACGAGUAUGAAAUGCAGCACACCUAUAUAG-
((......)).--.........((((((....((((((((...((((((.(((((((....)))))))))).))).))))))))..))))))..........- ( -30.50)
>DroSim_CAF1 8908 99 - 1
GCUCUCAUGCC--GCUUUCAACGUGCUGAAUU-UUCGUGCGGCCGUCGGCUAUAUAGUUGUCUAUAUAUCGUACGAGUAUGAAAUGCAGCGCACCUAUAUAG-
((......)).--.........((((((...(-(((((((...((((((.(((((((....)))))))))).))).))))))))..))))))..........- ( -30.80)
>DroEre_CAF1 1426 102 - 1
GCGCUCUUGCCUCUUUUUCAACGUGCUGCAUU-UUGGUGCGGCCGUCGGCUAUAUAGUUGUCUAUAUAUCGCACGGGUAUGAAAUGCAGCGCACCUAUAUACA
..((....))............((((((((((-(((.(((..(((((((.(((((((....)))))))))).))))))))))))))))))))........... ( -34.20)
>DroYak_CAF1 7834 98 - 1
--GCUCUA--UGCUUUUUCAACGUGCUGAAUU-UUCGUGCGGCCGACGGCUAUAUAGUUGUCUAUAUAUUGCACGAGUAUGAAAUGCAGUGCACCUAUACAGU
--((....--.)).........(..(((...(-(((((((((((...))))((((((....)))))).........))))))))..)))..)........... ( -25.50)
>consensus
GCGCUCAUGCC__GUUUUCAACGUGCUGAAUU_UUCGUGCGGCCGUCGGCUAUAUAGUUGUCUAUAUAUCGCACGAGUAUGAAAUGCAGCGCACCUAUAUAG_
......................((((((.(((.(((((((((((...)))(((((((....))))))).)))))))).....))).))))))........... (-26.52 = -25.78 +  -0.75)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:32 2006