Locus 3604

Sequence ID X_DroMel_CAF1
Location 9,658,398 – 9,658,511
Length 113
Max. P 0.536047
window5899

overview

Window 9

Location 9,658,398 – 9,658,511
Length 113
Sequences 3
Columns 113
Reading direction forward
Mean pairwise identity 79.32
Mean single sequence MFE -19.73
Consensus MFE -14.37
Energy contribution -14.27
Covariance contribution -0.10
Combinations/Pair 1.19
Mean z-score -1.39
Structure conservation index 0.73
SVM decision value 0.00
SVM RNA-class probability 0.536047
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9658398 113 + 22224390
AAAAAACAAAAAUAGAAAAAAAAUGCAAUCAGAUUCCGUUUCAAAUUUGAUCAAAUUUGAAAUCAAAUGAAUGGCUGGCUAGUGAAUGGCAAUUGGUGGUUAAACACUGAACU
........................((..(((......(((((((((((....)))))))))))....)))...))..((((.....))))..(..(((......)))..)... ( -20.50)
>DroSim_CAF1 8519 98 + 1
AAA---------------AAAAAUGAAAUCAGAUUCCGUUUCAAAUUUGAUCAAAUUUGAAAUCAAAUGAAUGGGUGGCUAGUGAAUGGCAAUUGGUGGUUAAACACUGAACU
...---------------..........(((((((..(((((((((((....)))))))))))..)))...((..((((((.(.(((....))).)))))))..))))))... ( -18.90)
>DroEre_CAF1 1028 92 + 1
------------------AAAA---GAAUCGCAUUCCGUUUCAAAUUUGAUUAAAUUGGAAGUCAAAUGACUGGGUGGCUGCUGAAUGUCAAUUGGUGGUUAAACACCGAACU
------------------....---((.(((((..(((..(...((((((((........))))))))....)..))).))).))...))..((((((......))))))... ( -19.80)
>consensus
AAA_______________AAAAAUGAAAUCAGAUUCCGUUUCAAAUUUGAUCAAAUUUGAAAUCAAAUGAAUGGGUGGCUAGUGAAUGGCAAUUGGUGGUUAAACACUGAACU
.............................(((...((((((...(((((((..........))))))))))))))))((((.....))))..((((((......))))))... (-14.37 = -14.27 +  -0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:32 2006