Locus 3602

Sequence ID X_DroMel_CAF1
Location 9,657,649 – 9,657,739
Length 90
Max. P 0.930570
window5896 window5897

overview

Window 6

Location 9,657,649 – 9,657,739
Length 90
Sequences 3
Columns 90
Reading direction forward
Mean pairwise identity 98.52
Mean single sequence MFE -23.07
Consensus MFE -20.60
Energy contribution -20.60
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -3.04
Structure conservation index 0.89
SVM decision value 1.21
SVM RNA-class probability 0.930570
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9657649 90 + 22224390
CGUGUCAACGAUAUGCGAUAUGCAAAUUUUCCACAUCAACCUGACACGAGCUUGCAUAACUUGCAACACUGCAAGUUGGGCAAACAACAA
(((((((..(((.((.((...........)))).)))....))))))).(.((((.(((((((((....))))))))).)))).)..... ( -26.80)
>DroEre_CAF1 317 90 + 1
CGUGUCAACGAUAUGCGAUAUGCAAAUUUUCCACAUCAACCUGACACGAGCUUGCAUAACUUGCAACACUGCAAGUUGGGAAAACAACAA
(((((((..(((.((.((...........)))).)))....)))))))........(((((((((....)))))))))............ ( -21.30)
>DroYak_CAF1 6479 90 + 1
CGUGUCAACGAUAUGCGAUAUGCAAAUUUUCCACAUCAACCUGACACGAGCUUGCAUAACUUGCAACACAGCAAGUUGGGAAAACAACAA
(((((((..(((.((.((...........)))).)))....))))))).(((((((.....))))....)))..((((......)))).. ( -21.10)
>consensus
CGUGUCAACGAUAUGCGAUAUGCAAAUUUUCCACAUCAACCUGACACGAGCUUGCAUAACUUGCAACACUGCAAGUUGGGAAAACAACAA
(((((((..(((.((.((...........)))).)))....)))))))........((((((((......))))))))............ (-20.60 = -20.60 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Window 7

Location 9,657,649 – 9,657,739
Length 90
Sequences 3
Columns 90
Reading direction reverse
Mean pairwise identity 98.52
Mean single sequence MFE -27.57
Consensus MFE -25.37
Energy contribution -25.37
Covariance contribution -0.00
Combinations/Pair 1.00
Mean z-score -2.37
Structure conservation index 0.92
SVM decision value 0.92
SVM RNA-class probability 0.882369
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9657649 90 - 22224390
UUGUUGUUUGCCCAACUUGCAGUGUUGCAAGUUAUGCAAGCUCGUGUCAGGUUGAUGUGGAAAAUUUGCAUAUCGCAUAUCGUUGACACG
.....((((((..(((((((......)))))))..)))))).((((((((..(((((((((...........)).))))))))))))))) ( -31.90)
>DroEre_CAF1 317 90 - 1
UUGUUGUUUUCCCAACUUGCAGUGUUGCAAGUUAUGCAAGCUCGUGUCAGGUUGAUGUGGAAAAUUUGCAUAUCGCAUAUCGUUGACACG
.....((((.(..(((((((......)))))))..).)))).((((((((..(((((((((...........)).))))))))))))))) ( -25.30)
>DroYak_CAF1 6479 90 - 1
UUGUUGUUUUCCCAACUUGCUGUGUUGCAAGUUAUGCAAGCUCGUGUCAGGUUGAUGUGGAAAAUUUGCAUAUCGCAUAUCGUUGACACG
.....((((.(..(((((((......)))))))..).)))).((((((((..(((((((((...........)).))))))))))))))) ( -25.50)
>consensus
UUGUUGUUUUCCCAACUUGCAGUGUUGCAAGUUAUGCAAGCUCGUGUCAGGUUGAUGUGGAAAAUUUGCAUAUCGCAUAUCGUUGACACG
.....((((.(..(((((((......)))))))..).)))).((((((((..(((((((((...........)).))))))))))))))) (-25.37 = -25.37 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:30 2006