Locus 3601

Sequence ID X_DroMel_CAF1
Location 9,656,348 – 9,656,465
Length 117
Max. P 0.791656
window5895

overview

Window 5

Location 9,656,348 – 9,656,465
Length 117
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 93.67
Mean single sequence MFE -33.17
Consensus MFE -29.62
Energy contribution -29.75
Covariance contribution 0.12
Combinations/Pair 1.07
Mean z-score -1.69
Structure conservation index 0.89
SVM decision value 0.59
SVM RNA-class probability 0.791656
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9656348 117 - 22224390
AACAACAAUGGCUUCAAUGGCCACGGCUGAGUGACCUUUCUGGUCGUCAAGUAAUCGCAUUCGCAACGGUAGCCCCG---ACAACUUCGCAUUUUUAUGGCAACAAACGUCAGCCAUAAA
........(((((.....))))).((((((((((((.....))))((.((((....((....))..(((.....)))---...)))).)).......((....)).)).))))))..... ( -33.60)
>DroAna_CAF1 21244 116 - 1
UACAACAAUG-CCACGGUGGCCACGGCUGAGUGACCUUUCUGGUCGUCAAGUAAUCGCAUUCGCAACGGUAGCCCCG---ACAACUUCGCAUUUUUAUGGCAACAAACGUCAGCCAUAAA
......((((-(...((.(((..(((((((.(((((.....))))))).)))....((....))..))...)))))(---(.....)))))))((((((((.((....))..)))))))) ( -31.20)
>DroSim_CAF1 5802 117 - 1
AACAACAAUGGCUUCAAUGGCCACGGCUGAGUGACCUUUCUGGUCGUCAAGUAAUCGCAUUCGCAACGGUAGCCCCG---ACAACUUCGCAUUUUUAUGGCAACAAACGUCAGCCAUAAA
........(((((.....))))).((((((((((((.....))))((.((((....((....))..(((.....)))---...)))).)).......((....)).)).))))))..... ( -33.60)
>DroYak_CAF1 5205 120 - 1
AACAACAAUGGCUUCAAUGGCCACGGCUGAGUGACCUUUCUGGUCGUCAAGUAAUCGCAUUCGCAACGGUAGCAGUGGCAGCAACUUCGCAUUUUUAUGCCAGCAAACGUCAGCCAUAAA
.......((((((...((((((((.((((.((((((.....))))...........((....)).))..)))).))))).........((((....)))).......))).))))))... ( -34.30)
>consensus
AACAACAAUGGCUUCAAUGGCCACGGCUGAGUGACCUUUCUGGUCGUCAAGUAAUCGCAUUCGCAACGGUAGCCCCG___ACAACUUCGCAUUUUUAUGGCAACAAACGUCAGCCAUAAA
........(((((.....))))).((((((((((((.....))))((.((((....((....))..(((.....)))......)))).)).......((....)).)).))))))..... (-29.62 = -29.75 +   0.12)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:28 2006