Locus 36

Sequence ID X_DroMel_CAF1
Location 135,552 – 135,655
Length 103
Max. P 0.617629
window45

overview

Window 5

Location 135,552 – 135,655
Length 103
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 87.67
Mean single sequence MFE -31.56
Consensus MFE -20.70
Energy contribution -20.70
Covariance contribution -0.00
Combinations/Pair 1.07
Mean z-score -2.30
Structure conservation index 0.66
SVM decision value 0.17
SVM RNA-class probability 0.617629
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 135552 103 - 22224390
CCAAACAGGUAUCACUUCCA---------AUUGUGUGCACGACAGC------ACACGCAUUUCCCAUUUGCAUUGGAAGGUAUGCGUGUUUUUGAUGCAUCUGUGUCUGUGUGAUUCU
..(((((.((((..((((((---------((.((((((......))------))))(((.........)))))))))))..)))).)))))..(((((....)))))........... ( -34.30)
>DroSec_CAF1 7717 103 - 1
CGAAACAGGUAUCACUUCCA---------AUUGUGAGCACGACAGC------ACACGCAUUUCCCAUUUGCAUUGGAAGGUAUGCGUGUUUUUAAUGCAUCUGUGUCUGUGUGAUUCU
.((((((.((((..((((((---------((.(((.((......))------.)))(((.........)))))))))))..)))).))))))..(((((........)))))...... ( -28.40)
>DroSim_CAF1 7496 103 - 1
CGAAACAGGUAUCACUUCCA---------AUUGUGAGCACGACAGC------ACACGCAUUUCCCAUUUGCAUUGGAAGGUAUGCGUGUUUUUAAUGCAUCUGUGUCUGUGUGAUUCU
.((((((.((((..((((((---------((.(((.((......))------.)))(((.........)))))))))))..)))).))))))..(((((........)))))...... ( -28.40)
>DroEre_CAF1 6764 100 - 1
CGAAGCAGGUAUCAAUUCCA---------AUUGUGAGCACGACAGC------ACACGCAUUUCCAAUUUGUAUUGGAAGGUAUGUGUGC---UAAUGCAUCUGUGUCUGUGUGAUUCU
.((.((((((..((((....---------))))...(((....(((------(((((..((((((((....))))))))...)))))))---)..))))))))).))........... ( -29.60)
>DroYak_CAF1 7016 115 - 1
CGAAACAGGUAUCAAUUCCAAUUGUUCCAAUUGUGAGCACGACAGCACAAGCACACGCAUUUCCAAUUCCUAUUGGAAGGUAUGUGUGU---UAGUGCAUCUGUGUCUGUGUGAUUCU
.((.((((((.....(((((((((...)))))).))).......((((.((((((((..((((((((....))))))))...)))))))---).)))))))))).))........... ( -37.10)
>consensus
CGAAACAGGUAUCACUUCCA_________AUUGUGAGCACGACAGC______ACACGCAUUUCCCAUUUGCAUUGGAAGGUAUGCGUGUUUUUAAUGCAUCUGUGUCUGUGUGAUUCU
.((.((((((....................((((....))))..((......((((((((((((.((....)).))))...)))))))).......)))))))).))........... (-20.70 = -20.70 +  -0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:58 2006