Locus 3599

Sequence ID X_DroMel_CAF1
Location 9,653,181 – 9,653,275
Length 94
Max. P 0.706758
window5893

overview

Window 3

Location 9,653,181 – 9,653,275
Length 94
Sequences 4
Columns 120
Reading direction reverse
Mean pairwise identity 80.69
Mean single sequence MFE -28.23
Consensus MFE -17.30
Energy contribution -17.80
Covariance contribution 0.50
Combinations/Pair 1.00
Mean z-score -1.94
Structure conservation index 0.61
SVM decision value 0.37
SVM RNA-class probability 0.706758
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9653181 94 - 22224390
UUUCGUGCUAGCCACGUUCCACAGAGCC----GUUGCGACAAUUUGUAAACUAGGCCUGAAUAAAACAUGAAAAUGGAAAACAACGGGG----------------------CAACGGCAG
.....((((.(((.((((...(((.(((----.((((((....))))))....)))))).......(((....)))......)))).))----------------------)...)))). ( -26.00)
>DroAna_CAF1 20404 96 - 1
UUUCGUGCCGGCCACGUCCCA--GGGCCCAGAGUUGCGACAAUUUGUAAACUAGGCCUGAAUAAAACAUGAAAAUGGAAAACACAACGA----------------------CUCUGGCAG
.....((((((...(((....--(((((.((..((((((....)))))).)).)))))........(((....))).........))).----------------------..)))))). ( -25.90)
>DroSim_CAF1 3911 94 - 1
UUUCGUGCUAGCCACGUUCCACAGAGCC----GUUGCGACAAUUUGUAAACUAGGCCUGAAUAAAACAUGAAAAUGGAAAACAACGGGG----------------------CAACGGCAG
.....((((.(((.((((...(((.(((----.((((((....))))))....)))))).......(((....)))......)))).))----------------------)...)))). ( -26.00)
>DroYak_CAF1 3642 116 - 1
UUUCGUGCUAGCCACGUUCCACAGAGCC----GUUGCGACAAUUUGUAAACUAGGCCUGAAUAAAACAUGAAAAUGGAAAACAACGGGAAAACGGGACAACGGCAGCGGGAAAACGGCAG
((((.((((.(((..(((((.(((.(((----.((((((....))))))....)))))).......(((....))).................)))))...))))))).))))....... ( -35.00)
>consensus
UUUCGUGCUAGCCACGUUCCACAGAGCC____GUUGCGACAAUUUGUAAACUAGGCCUGAAUAAAACAUGAAAAUGGAAAACAACGGGA______________________CAACGGCAG
..........(((........(((.(((.....((((((....))))))....)))))).......(((....))).......................................))).. (-17.30 = -17.80 +   0.50)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:26 2006