Locus 3597

Sequence ID X_DroMel_CAF1
Location 9,643,167 – 9,643,266
Length 99
Max. P 0.788647
window5891

overview

Window 1

Location 9,643,167 – 9,643,266
Length 99
Sequences 3
Columns 99
Reading direction reverse
Mean pairwise identity 94.61
Mean single sequence MFE -22.67
Consensus MFE -22.32
Energy contribution -22.10
Covariance contribution -0.22
Combinations/Pair 1.05
Mean z-score -1.65
Structure conservation index 0.98
SVM decision value 0.58
SVM RNA-class probability 0.788647
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9643167 99 - 22224390
UCCCGAUUUUUCGCAACUAAUUACUUUUUCCGACGGCAGCCGUAGAACUUCGCUUUCCGGCCAAGUUGAGCCAACUAGUUUGUUGGCUUCGCUUCAACU
...(((....)))..................((.(((........(((((.(((....))).)))))((((((((......)))))))).))))).... ( -22.40)
>DroSec_CAF1 18569 99 - 1
UCCCUAUUUUUCGCAACUAAUUACUUUUUCCGACGGCAGCCGUAGAACUUCGCUUUCCGGCCAAGUUGAGCCAACUAAUUCGUUGGCUUCGCUUCAACU
............((................((((....((((.(((.......))).))))...))))(((((((......)))))))..))....... ( -21.50)
>DroEre_CAF1 20022 99 - 1
UACAGAUUUUUCUCAACUAAUUACUUUUUCCGACGGCAGCCUUAGAACUUCGCUUUCCGGCCAAGUUGAGCCAACUAGUUUGUUGGCUUCGCCUCAACU
...............................((.(((........(((((.(((....))).)))))((((((((......)))))))).))))).... ( -24.10)
>consensus
UCCCGAUUUUUCGCAACUAAUUACUUUUUCCGACGGCAGCCGUAGAACUUCGCUUUCCGGCCAAGUUGAGCCAACUAGUUUGUUGGCUUCGCUUCAACU
...............................((.(((........(((((.(((....))).)))))((((((((......)))))))).))))).... (-22.32 = -22.10 +  -0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:24 2006