| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,632,427 – 9,632,541 |
| Length | 114 |
| Max. P | 0.520805 |
| Location | 9,632,427 – 9,632,541 |
|---|---|
| Length | 114 |
| Sequences | 6 |
| Columns | 114 |
| Reading direction | forward |
| Mean pairwise identity | 83.47 |
| Mean single sequence MFE | -34.35 |
| Consensus MFE | -27.56 |
| Energy contribution | -27.67 |
| Covariance contribution | 0.11 |
| Combinations/Pair | 1.05 |
| Mean z-score | -1.42 |
| Structure conservation index | 0.80 |
| SVM decision value | -0.03 |
| SVM RNA-class probability | 0.520805 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9632427 114 + 22224390 GAAUUUCCCAAGGACGGGGGGCAAGGUGCCGUGUGACAUGCAUGGCGCAAGUGUUUUAACACAAUUUAAUAUGGCCCGACGAUGACGACAGGGACAACGGGAGAUGACACUGUG ..(((((((.....((..((((...(((((((((.....)))))))))..((((....))))...........))))..)).........(......))))))))......... ( -38.70) >DroPse_CAF1 37024 95 + 1 ------------GGCAUGGGGCA-GGUGCCGUGUGACAUGCAUGGCGCAAGUGUUUUAACACAAUUUAAUAUGGCCCGACGA---CGACAGGGAAGAGAGGGAGUAAAACC--- ------------......((((.-.(((((((((.....)))))))))..((((....))))...........)))).....---..............((........))--- ( -27.00) >DroSec_CAF1 8084 113 + 1 GAAUUUCACAAGGACGGGGGGCA-GGUGCCGUGCGACAUGCAUGGCGCAAGUGUUUUAACACAAUUUAAUAUGGCCCGACGAUGACGACAGGGACAACGGGAGAUGACACUGUG ..............((..((((.-.(((((((((.....)))))))))..((((....))))...........))))..))......((((...((.(....).))...)))). ( -36.40) >DroEre_CAF1 8067 113 + 1 GAGUUUCCCAAGGACGAGGGGCA-GGUGCCGUGCGACAUGCAUGGCGCAAGUGUUUUAACACAAUUUAAUAUGGCCCGACGAUGAUGACAGGGACAACGGGAGAUGACACUGGG ..(((((((.....((..((((.-.(((((((((.....)))))))))..((((....))))...........))))..)).........(......))))))))......... ( -38.30) >DroYak_CAF1 9698 113 + 1 GAAUUUCCCAAGGACGGGGGGCA-GGUGCCGUGUGACAUGCAUGGCGCAAGUGUUUUAACACAAUUUAAUAUGGCCCGACGAUGACGACAGGGACAACGGGAGAUGACACUGUG ..(((((((.....((..((((.-.(((((((((.....)))))))))..((((....))))...........))))..)).........(......))))))))......... ( -38.70) >DroPer_CAF1 36236 95 + 1 ------------GGCAUGGGGCA-GGUGCCGUGUGACAUGCAUGGCGCAAGUGUUUUAACACAAUUUAAUAUGGCCCGACGA---CGACAGGGAAGAGAGGGAGUAAAACC--- ------------......((((.-.(((((((((.....)))))))))..((((....))))...........)))).....---..............((........))--- ( -27.00) >consensus GAAUUUCCCAAGGACGGGGGGCA_GGUGCCGUGUGACAUGCAUGGCGCAAGUGUUUUAACACAAUUUAAUAUGGCCCGACGAUGACGACAGGGACAACGGGAGAUGACACUGUG ..............((..((((...(((((((((.....)))))))))..((((....))))...........))))..))................................. (-27.56 = -27.67 + 0.11)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:20 2006