Locus 3592

Sequence ID X_DroMel_CAF1
Location 9,623,841 – 9,623,944
Length 103
Max. P 0.889912
window5882

overview

Window 2

Location 9,623,841 – 9,623,944
Length 103
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 68.64
Mean single sequence MFE -48.43
Consensus MFE -24.02
Energy contribution -27.36
Covariance contribution 3.34
Combinations/Pair 1.08
Mean z-score -2.06
Structure conservation index 0.50
SVM decision value 0.96
SVM RNA-class probability 0.889912
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9623841 103 - 22224390
GUCAGCUGUUGACGCG--CAGGGUUGCAUGCCGACUAGCGCCCCCGG---------------GCGGUUGAAAUGGGCGUCGUAGCUUAGCACCGCAGGCGGUAGGGGGCGCCAGCGGGCA
(((((...)))))(((--(......))...(((.((.((((((((..---------------(((((.(...(((((......))))).))))))........)))))))).))))))). ( -46.20)
>DroPse_CAF1 27326 114 - 1
AACAGCUGUCGACCCGGACAGGGUUGAUUGCGUGCGAGCGCAGCCUGCGGCUUUUUUUCGAAGCGUUCCAAACG------CUAGUUCACAGCUGCAGGCAAUAGAGGGCGGCAGCAGCAU
....(((((((.(((.............(((((....)))))((((((((((......(..(((((.....)))------)).).....))))))))))......))))))))))..... ( -50.60)
>DroPer_CAF1 26471 114 - 1
AACAGCUGUCGACUCGGACAGGGUUGAUUGCGUGCGAGCGCAGCCUGCGGCUUUUUUUCGAAGCGUUCCAAACG------CUAGUUCACAGCUGCAGGCAAUAGAGGGCGGCAGCAGCAA
....(((((((.(((.............(((((....)))))((((((((((......(..(((((.....)))------)).).....))))))))))....)))..)))))))..... ( -48.50)
>consensus
AACAGCUGUCGACCCGGACAGGGUUGAUUGCGUGCGAGCGCAGCCUGCGGCUUUUUUUCGAAGCGUUCCAAACG______CUAGUUCACAGCUGCAGGCAAUAGAGGGCGGCAGCAGCAA
....(((((((.(((..............((((....)))).((((((((((.....................................))))))))))......))))))))))..... (-24.02 = -27.36 +   3.34)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:16 2006