| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,622,131 – 9,622,231 |
| Length | 100 |
| Max. P | 0.860257 |
| Location | 9,622,131 – 9,622,231 |
|---|---|
| Length | 100 |
| Sequences | 4 |
| Columns | 102 |
| Reading direction | forward |
| Mean pairwise identity | 86.71 |
| Mean single sequence MFE | -28.58 |
| Consensus MFE | -23.39 |
| Energy contribution | -22.82 |
| Covariance contribution | -0.56 |
| Combinations/Pair | 1.10 |
| Mean z-score | -1.89 |
| Structure conservation index | 0.82 |
| SVM decision value | 0.83 |
| SVM RNA-class probability | 0.860257 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9622131 100 + 22224390 UGCCC-CCGCGGCCACGCCCCCA-AUGCCCUGGCCACCUUCUUUCACAUUUUUUUUUCUUUUUUUUUUUGUGGCCACGCCCCGCGCGUAAUGUGGGUGCGAA .((.(-(((((((((((....).-..((....))...................................))))))((((.....))))...))))).))... ( -28.00) >DroSec_CAF1 82564 88 + 1 UGCCC-CCGCGGCCACGCCCCCAGAUGCCCUGGCCCCCUUCUUUCACAUUUU-------------UUUUGUGGCCACGCCCCGCGCGUAAUGUGGGUGCGAA .((.(-(((((((((((...((((.....))))...................-------------...)))))))((((.....))))...))))).))... ( -29.91) >DroEre_CAF1 87097 97 + 1 UGCCCCCCGCGGCCACGCCCCCA-AUCCCCUGGCCCCCUUCCUGCACCUAUUUUUUUUUA----UUUUUGUGGCCACGCCCCGCGCGUAAUGUGGGUGCGAA .((..((((((((((((((....-.......)))...(.....)................----.....))))))((((.....))))...))))).))... ( -26.80) >DroYak_CAF1 86962 100 + 1 UGCCC-CCGUGGCCACGCCCCCA-AUCCCUUGGCCCCCUUCUUUCACAUUUUUUUUUCUGUAUUUUUUUGUGGCCACGCCCCGCGCGUAAUGUGGGUGCGAA .....-..(((((((((((....-.......)))...........(((..........)))........))))))))((((((((.....)))))).))... ( -29.60) >consensus UGCCC_CCGCGGCCACGCCCCCA_AUCCCCUGGCCCCCUUCUUUCACAUUUUUUUUUCU_____UUUUUGUGGCCACGCCCCGCGCGUAAUGUGGGUGCGAA .((.....))(((((((((............))).........(...).....................)))))).(((((((((.....)))))).))).. (-23.39 = -22.82 + -0.56)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:15 2006