Locus 3586

Sequence ID X_DroMel_CAF1
Location 9,612,758 – 9,612,864
Length 106
Max. P 0.931874
window5867

overview

Window 7

Location 9,612,758 – 9,612,864
Length 106
Sequences 4
Columns 113
Reading direction forward
Mean pairwise identity 94.06
Mean single sequence MFE -37.17
Consensus MFE -35.97
Energy contribution -36.23
Covariance contribution 0.25
Combinations/Pair 1.00
Mean z-score -1.82
Structure conservation index 0.97
SVM decision value 1.22
SVM RNA-class probability 0.931874
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9612758 106 + 22224390
CUUUUCUUGCUGUGCAGCCAAAGGACCGGGCCAUUAACAGGACCUGGCCAAAGGAC-------AAAGGACAUUCCCGAUGCUGGGCAGCGAGAUGCAGAGAGUCGAAUAGGAG
(((((((((((((.((((....((.(((((((.......)).))))))).......-------...((......))...)))).)))))))))...))))............. ( -37.70)
>DroSec_CAF1 71538 106 + 1
AUUUUCUUGCUGUGCAGCCAAAGGGCCGGGCCAUUAACAGGACCUGGCCAAAGGAC-------AAAGGACAUUCCCGAUGCUGGGCAGCGAGAUGCAGAGAGUCGAAUAGGAG
....(((((((((.((((.....(((((((((.......)).))))))).......-------...((......))...)))).))))))))).................... ( -40.70)
>DroSim_CAF1 58934 106 + 1
AUUUUCUUGCUGUGCAGCCAAAGGACCGGGCCAUUAACAGGACCUGGCCAAAGGAC-------AAAGGACAUUCCCGAUGCUGGGCAGCGAGAUGCAGAGAGUCGAAUAGGAG
....(((((((((.((((....((.(((((((.......)).))))))).......-------...((......))...)))).))))))))).................... ( -37.10)
>DroYak_CAF1 76247 113 + 1
AUUUUCUUGCUGUGCAGCCAGAGGACCCGGCCAUUAACAGGACCUGGCCAAAGGACAAAGGACAAAGGACAUGCCCGAUGCUGGGCAGCGAGAUGCAGAGAGUCGAACAGGAG
....(((((((((.((((....((.((.((((.......)).)).)))).................((......))...)))).))))))))).................... ( -33.20)
>consensus
AUUUUCUUGCUGUGCAGCCAAAGGACCGGGCCAUUAACAGGACCUGGCCAAAGGAC_______AAAGGACAUUCCCGAUGCUGGGCAGCGAGAUGCAGAGAGUCGAAUAGGAG
....(((((((((.((((....((.(((((((.......)).))))))).................((......))...)))).))))))))).................... (-35.97 = -36.23 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:03 2006