Locus 3585

Sequence ID X_DroMel_CAF1
Location 9,611,432 – 9,611,522
Length 90
Max. P 0.989243
window5866

overview

Window 6

Location 9,611,432 – 9,611,522
Length 90
Sequences 5
Columns 90
Reading direction reverse
Mean pairwise identity 94.44
Mean single sequence MFE -17.84
Consensus MFE -15.92
Energy contribution -15.96
Covariance contribution 0.04
Combinations/Pair 1.07
Mean z-score -1.83
Structure conservation index 0.89
SVM decision value 2.16
SVM RNA-class probability 0.989243
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9611432 90 - 22224390
ACAUCAAGUGGCACGUUGCACAGAAAAGUGCGUGUGUGUCGCAGCAUUAAAAGUAGACAAAUAGAACAAAAAUAUAUUAAAUGGUAAAUG
..((((.(((((((..(((((......)))))...))))))).((.......))...........................))))..... ( -17.10)
>DroSec_CAF1 70113 90 - 1
ACAGCAAGUGGCACGUUGCACAGAAAAGUGCGUGUGUGUCGCAGCAUUAAAAGUAGACAAAUAGAACAAAAAUAUAUUAAAUGGUAAAUG
...((..(((((((..(((((......)))))...))))))).))............................................. ( -18.00)
>DroSim_CAF1 57627 90 - 1
ACAGCAAGUGGCACGUUGCACAGAAAAGUGCGUGUGUGUCGCAGCAUUAAAAGUAGACAAAUAGAACAAAAAUAUAUUAAAUGGUAAAUG
...((..(((((((..(((((......)))))...))))))).))............................................. ( -18.00)
>DroEre_CAF1 74987 89 - 1
ACAGCAAGUGGCACGUUGCACAGCAAAGUGCGUGUGUGUCGCAGCAUUA-AAGUAGACAAAUAGAACAAAAAUAUAUUAAAUGGUAAAAA
...((..(((((((..(((((......)))))...))))))).))....-........................................ ( -18.00)
>DroYak_CAF1 74425 90 - 1
ACAGCAAGUGGCACGUUGCACAUCAAAGUGCGUGCGUCUCGCCGCAUUAAAAGUAGACAAAUAGUACAAUAAUAUAUUAAAUGGUAAAAA
...((..((((((((((((((......))))).))))...)))))............((..(((((........)))))..))))..... ( -18.10)
>consensus
ACAGCAAGUGGCACGUUGCACAGAAAAGUGCGUGUGUGUCGCAGCAUUAAAAGUAGACAAAUAGAACAAAAAUAUAUUAAAUGGUAAAUG
.......((((((((((((((......))))).)))))))))................................................ (-15.92 = -15.96 +   0.04)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:03:02 2006