Locus 3572

Sequence ID X_DroMel_CAF1
Location 9,593,284 – 9,593,376
Length 92
Max. P 0.844662
window5844

overview

Window 4

Location 9,593,284 – 9,593,376
Length 92
Sequences 5
Columns 119
Reading direction reverse
Mean pairwise identity 78.58
Mean single sequence MFE -39.28
Consensus MFE -24.24
Energy contribution -26.08
Covariance contribution 1.84
Combinations/Pair 1.04
Mean z-score -1.95
Structure conservation index 0.62
SVM decision value 0.76
SVM RNA-class probability 0.844662
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9593284 92 - 22224390
ACUGGUCUUAUGA--------UGGUCGGGAUGGU---------CCUUCGGUCCACUG----GUCCUCUCACUUGAGGAUCUGGACUACGGCUGGACGUGA------ACGUGGACCUGCA
.(((..(......--------.)..)))...(((---------((..(((((((..(----((((((......))))))))))))((((......)))).------.)).))))).... ( -36.90)
>DroSec_CAF1 52013 102 - 1
ACUGGUCUUAUGA--------UGGUCGGUAUGCU---------CCUCCGGUCCACUGUUCGGUCCUCUCACUUGAGGAUCUGGACUACGCCUGGACGUGGACGUGGACGUGGACCUGCA
((((..(......--------.)..)))).(((.---------..((((((((((..((((((((((......))))).)))))(((((......)))))..)))))).))))...))) ( -40.60)
>DroSim_CAF1 38519 96 - 1
ACUGGUCUUAUGA--------UGGUCGGUAUGGU---------CCUCCGGUCCACUGUUCGGUCCUCUCACUUGAGGAUCUGGACUACGCCUGGACGUGG------ACGUGGACCUGCA
((((..(......--------.)..))))..(((---------((....((((((.(((((((((((......))))))).((......)).))))))))------))..))))).... ( -40.70)
>DroEre_CAF1 56805 94 - 1
ACUGGUCUUAUGA--------UGGUCGGGAUGGUCGGUAUGGUC---GGGU----U----GGUCCUCUCACUUGAGGAUCUGGACUACGCCCGGACCUGG------ACCUGAACCUGGA
....(((....))--------)(((((((..((((((..(((((---.((.----.----.((((((......)))))))).)))))..))..))))...------.)))).))).... ( -35.60)
>DroYak_CAF1 54871 109 - 1
ACUGGUCUUAUGAUGUUCUGAUGGUCGGGAUGGUCGAGAUGGUCCUCUGGUCCUCU----GGUCCUCUCACUUGAGGAUCUGGACUACGCCUGGACCUGG------ACCUGGACUUGGA
.(.(((((......((((((.....))))))((((.(...(((((.(((((((...----(((((((......))))))).)))))).)...)))))).)------))).))))).).. ( -42.60)
>consensus
ACUGGUCUUAUGA________UGGUCGGGAUGGU_________CCUCCGGUCCACUG___GGUCCUCUCACUUGAGGAUCUGGACUACGCCUGGACGUGG______ACGUGGACCUGCA
.(((..(...............)..)))....................(((((((.....(((((((......)))))))....(((((......)))))........))))))).... (-24.24 = -26.08 +   1.84)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:42 2006