Locus 3570

Sequence ID X_DroMel_CAF1
Location 9,591,024 – 9,591,117
Length 93
Max. P 0.759431
window5841

overview

Window 1

Location 9,591,024 – 9,591,117
Length 93
Sequences 5
Columns 99
Reading direction forward
Mean pairwise identity 83.84
Mean single sequence MFE -19.64
Consensus MFE -16.50
Energy contribution -16.42
Covariance contribution -0.08
Combinations/Pair 1.15
Mean z-score -1.70
Structure conservation index 0.84
SVM decision value 0.50
SVM RNA-class probability 0.759431
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9591024 93 + 22224390
GCUAGGACCGAUCGAUUAAUCGGCUUAGAAACAAAUUUUGUUUGCAUUUUUAAUGUGUUUUUUUUUUUU------UGUGUGGUGCUUAAAUGUGCUGCU
.(((((.(((((......))))))))))..(((((........((((.......)))).........))------)))(..(..(......)..)..). ( -22.03)
>DroSec_CAF1 49744 86 + 1
GCUAGGCCCGAUUGAUUAAUCGGCUUAGAAACUAAUUUUGUUUGCAUUUUUAAUGUGUUUUG-------------UCUGUGGUGCUUAAAUGUGCUGCU
.(((((((.((((....)))))))))))((((.......))))((((.(((((.(..((...-------------.....))..)))))).)))).... ( -20.30)
>DroSim_CAF1 36277 86 + 1
ACUACGCCCGAUUGAUUAAUCGGCUUAGAAACAAAUUUUGUUUGCAUUUUUAAUGUGUUUUG-------------UCUGUGGUGCUUAAAUGUGCUGCU
.(((.(((.((((....))))))).)))(((((.....)))))((((.(((((.(..((...-------------.....))..)))))).)))).... ( -17.50)
>DroEre_CAF1 54512 92 + 1
GCUAGGCCUCGUUUAUUAAUCGGCUUAGAAACAAAUUGUGUUUGCAUUUUUAAUGUGUUUCUUUUUUUU-------CCGUUGUGCUUAAAUAUGCUGCU
.(((((((..(((....))).)))))))(((((.....)))))((((.(((((.(..(..(........-------..)..)..)))))).)))).... ( -17.00)
>DroYak_CAF1 52450 99 + 1
GCUAGGCCUGGUUUAUUAAUCGGCUUAGAAACAAAUUUUGUUUGCAUUUUUAAUGUGCUUUUUUUUUUUGUUUUGCCUGUUGUGCUUAAAUAUGCUGCU
.(((((((.((((....)))))))))))(((((((........((((.......))))........))))))).((.((((.......)))).)).... ( -21.39)
>consensus
GCUAGGCCCGAUUGAUUAAUCGGCUUAGAAACAAAUUUUGUUUGCAUUUUUAAUGUGUUUUUUUUUUUU______UCUGUGGUGCUUAAAUGUGCUGCU
.(((((.((((((....)))))))))))(((((.....)))))((((.(((((.(..(.......................)..)))))).)))).... (-16.50 = -16.42 +  -0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:39 2006