Locus 357

Sequence ID X_DroMel_CAF1
Location 1,095,457 – 1,095,577
Length 120
Max. P 0.572454
window538

overview

Window 8

Location 1,095,457 – 1,095,577
Length 120
Sequences 6
Columns 120
Reading direction reverse
Mean pairwise identity 76.89
Mean single sequence MFE -46.93
Consensus MFE -24.45
Energy contribution -25.07
Covariance contribution 0.62
Combinations/Pair 1.43
Mean z-score -1.75
Structure conservation index 0.52
SVM decision value 0.08
SVM RNA-class probability 0.572454
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1095457 120 - 22224390
AAGGGGUCAAUCGUCAUAGUAGAUGAGGCUCACAACCUACUGGACAGCGUGGCCCAGCUGCACGGCUCCGAAAUCAGCCGUCAGCAGUUGGAGCGGGCCAAGGUGCAGAUCUCCGGCUAU
..((((((..(((((......)))))(((((....((....))........((((((((((((((((........))))))..)))))))).)))))))........)))).))...... ( -47.80)
>DroSec_CAF1 1561 120 - 1
AAGGCGUCCAUCGUCAUAGUAGAUGAGGCUCACAACCUACUGGACAGCGUGGCCCAGCUGCACGGCUCCGAAAUCAACCGGCAGCAGUUGGAGCGGGCCAAGGUGCAGAUCUCCGCCUAU
.(((((.((.(((((......)))))))...........(((.((....((((((.(((.((..((((((........))).)))...)).)))))))))..)).))).....))))).. ( -47.70)
>DroEre_CAF1 1545 120 - 1
AAGGGCUCCAUCGUAAUAGUCGAUGAGGCUCACAACCUAUUGGACAGCGUGGCCCAGCUGCACGGCUCUGAAAUCAACCGCCAGCAGUUGGAGCGGGCCAAGGUGCAGAUCUCCUGCUAU
..((((..(((((.......)))))..))))...((((..(((.(..(((...((((((((..(((..((....))...))).)))))))).))).))))))))((((.....))))... ( -46.10)
>DroYak_CAF1 1557 120 - 1
AAGGGCUCCAUUGUAAUAGUCGACGAGGCUCACAACCUGUUGGACAGUGUGGCCCAGCUGCACGGCUCUGAAAUCAACCGCCAGCAGCUGGAGCGGGCCAAGGUGCAGAUCUCCGGCUAU
..((((..((((((.....(((((.(((.......))))))))))))))..)))).((((..(((...((....)).))).))))((((((((.(.((....)).)....)))))))).. ( -45.20)
>DroAna_CAF1 1579 120 - 1
AAAGGUUCCAUCGUUAUUGUCGAUGAGGCCCACAAUCUGCUGGACUCGGUGGCCCAGAUUCAUGGGGCGGAGAUAACCCGUUCGGACAUGGAGUUCGCCCAGCUGGAGAUGAUCAACUAC
...(((..(((((.......)))))..)))..((.((((((((((((.(((.((((......))))((((.......)))).....))).))))....))))).)))..))......... ( -39.60)
>DroMoj_CAF1 3857 120 - 1
CGCGGCGCCAUCAUCAUUGUGGACGAGGCGCACAAUCUGCUGGACACCAUUGCCCAGCUGCACAGCAGCGAGCUGAGCCUGGCCCAGCUGCAGCUGGCCAAGCAACAGCUGGCUGGGUAC
.((((((((.((.((......)).))))))).......(((((.((....)).))))))))((..((((.(((((.((.(((((.(((....)))))))).))..))))).)))).)).. ( -55.20)
>consensus
AAGGGCUCCAUCGUCAUAGUCGAUGAGGCUCACAACCUACUGGACAGCGUGGCCCAGCUGCACGGCUCCGAAAUCAACCGCCAGCAGUUGGAGCGGGCCAAGGUGCAGAUCUCCGGCUAU
...(((((..(((((......)))))(((((....((....))........((((((((((.(((............)))...)))))))).)))))))........))..)))...... (-24.45 = -25.07 +   0.62)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:29 2006