Locus 3566

Sequence ID X_DroMel_CAF1
Location 9,575,905 – 9,575,996
Length 91
Max. P 0.920364
window5834

overview

Window 4

Location 9,575,905 – 9,575,996
Length 91
Sequences 5
Columns 112
Reading direction reverse
Mean pairwise identity 80.39
Mean single sequence MFE -27.86
Consensus MFE -17.60
Energy contribution -18.52
Covariance contribution 0.92
Combinations/Pair 1.12
Mean z-score -2.22
Structure conservation index 0.63
SVM decision value 1.13
SVM RNA-class probability 0.920364
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9575905 91 - 22224390
UCUGACCAAAUCGUAUCUGUAGUGACCUAUCUUGCAGAUACAUAUCUCGAGGUGCGGUUU-------UGGUAUCUUCGGAUUUGGGA--------------UUUGAGAUUUC
.....(((((((((((((((((.((....))))))))))))......((((((((.....-------..))))).))))))))))..--------------........... ( -28.70)
>DroSec_CAF1 34948 98 - 1
UCUGACCAAAUCGCAUCUGGAGUGACCUAUCUUGCAGAUACAUAUCUCGAAGUGCGGUUU-------UGAGAUCUUCGGAUUUUGGA-------UUUGAGAUUUGAGAUUUC
.......((((((((..(.(((.....((((.....)))).....))).)..))))))))-------.(((((((.((((((((...-------...))))))))))))))) ( -27.50)
>DroSim_CAF1 21397 98 - 1
UCUGACCAAAUCGCAUCUGGAGUGACCUAUCUUGCAGAUACAUAUCUCGAAGUGCGGUUU-------UGGGAUCUUCGGAUUUUGGA-------UUUGAGAUUUGAGAUUAC
.....((((((((((..(.(((.....((((.....)))).....))).)..))))).))-------)))(((((.((((((((...-------...))))))))))))).. ( -28.60)
>DroEre_CAF1 39741 106 - 1
UCUUUCCAAAUCGCAUCUGAAGUGACCUAUCUUCCAGAUACAUAUCUCGAAGUGCGGUUU------UUGGGAUCAACGGAUUUCGGAUGUCUGAUUACAGAUUUCAGAUUUC
..............(((((((..((((...((((.((((....)))).))))...))))(------(((..(((....)))..)))).(((((....))))))))))))... ( -26.10)
>DroYak_CAF1 36757 98 - 1
UUAGCCCAAAUCGCAUCUGGAGUGACCUAUCUUCUAGAUACAUAUCUCGAUGUGCGGUUUAGGGAUUUAAGAUCUACGGAUUUC--------------UGAUUUUAGAUUUC
....((((((((((((.(.(((.....((((.....)))).....))).).))))))))).)))((((((((((..........--------------.))))))))))... ( -28.40)
>consensus
UCUGACCAAAUCGCAUCUGGAGUGACCUAUCUUGCAGAUACAUAUCUCGAAGUGCGGUUU_______UGGGAUCUUCGGAUUUCGGA_______UU__AGAUUUGAGAUUUC
.....(((((((((((.(.(((.....((((.....)))).....))).).)))))))))........((((((....)))))))).......................... (-17.60 = -18.52 +   0.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:33 2006