Locus 3564

Sequence ID X_DroMel_CAF1
Location 9,558,005 – 9,558,097
Length 92
Max. P 0.520945
window5831

overview

Window 1

Location 9,558,005 – 9,558,097
Length 92
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 78.44
Mean single sequence MFE -22.94
Consensus MFE -13.99
Energy contribution -14.22
Covariance contribution 0.22
Combinations/Pair 1.12
Mean z-score -1.40
Structure conservation index 0.61
SVM decision value -0.02
SVM RNA-class probability 0.520945
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9558005 92 + 22224390
CCGCUUGGCUGCAUUUUGUUAAAAGGUGACAAUUAAUUUGUCAAUAAUGGAAAUUGUCACCCGGUGGUUGGGAAACAGAAACACCGC--AUUAG
..(((((((........)))))..((((((((((..((..(.....)..)))))))))))).((((....(....).....))))))--..... ( -25.10)
>DroPse_CAF1 29744 86 + 1
CCGCUUGGCUGCAUUUUGUUAAAAGGUGACAAUUAAUUUGUCAAUAAUGGAAAUUGUCACCAGGGGCG-GGAGCACAGGGACAACA-------G
...((((..(((.(((((((....((((((((((..((..(.....)..))))))))))))...))))-)))))))))).......-------. ( -23.00)
>DroSec_CAF1 18244 92 + 1
CCGCUUGGCUGCAUUUUGUUAAAAGGUGACAAUUAAUUUGUCAAUAAUGGAAAUUGUCACCCGGGGGUUGGGAAACAGAAACACCAC--UAUAG
(((.(((((........)))))..((((((((((..((..(.....)..)))))))))))))))(((((.(....)...))).))..--..... ( -23.80)
>DroYak_CAF1 17920 92 + 1
CCGCUUGGCUGCAUUUUGUUAAAAGGUGACAAUUAAUUUGUCAAUAAUGGAAAUUGUCACCCGGGGGUUGGGAAGCAGAAACACCGC--GAUAG
.(((.((.((((.((..(......((((((((((..((..(.....)..)))))))))))).......)..)).))))...))..))--).... ( -23.72)
>DroMoj_CAF1 29143 81 + 1
--GUUGUUCGGCAUUUUGUUAAAAGGUGACAAUUAAUUUGUCAAUAAUGAAAAUUGUCAACGGAGU--AGGGCCGC------ACCAGCU---AG
--((((..((((((((((((......((((((.....))))))(((((....))))).))))))))--...)))).------..)))).---.. ( -21.00)
>DroAna_CAF1 22772 89 + 1
CCGCCUGGCUGCAUUUUGUUAAAAGGUGACAAUUAAUUUGUCAAUAAUGGAAAUUGUCACCAGGGGCCUUAUA---CUAACCAUCGA--ACAGG
((.(((((..((((((..(((.....((((((.....)))))).)))..)))..)))..))))))).......---...........--..... ( -21.00)
>consensus
CCGCUUGGCUGCAUUUUGUUAAAAGGUGACAAUUAAUUUGUCAAUAAUGGAAAUUGUCACCCGGGGGUUGGGAAACAGAAACACCAC____UAG
((((......))............((((((((((..((..(.....)..)))))))))))).)).............................. (-13.99 = -14.22 +   0.22)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:30 2006