Locus 3563

Sequence ID X_DroMel_CAF1
Location 9,553,473 – 9,553,573
Length 100
Max. P 0.798090
window5830

overview

Window 0

Location 9,553,473 – 9,553,573
Length 100
Sequences 6
Columns 107
Reading direction forward
Mean pairwise identity 82.69
Mean single sequence MFE -34.03
Consensus MFE -26.53
Energy contribution -26.56
Covariance contribution 0.03
Combinations/Pair 1.05
Mean z-score -2.00
Structure conservation index 0.78
SVM decision value 0.61
SVM RNA-class probability 0.798090
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9553473 100 + 22224390
GU-UGGGGCGUGCGCAUUGAUUGAAUGCUCAAUUGAGCGCAUGAACCGGCGAUCAUUUUGUAC-AGCGCCCUCCCCCAGUACCGCCUCCUCCGCCCACCACA-----
((-.(((((((((((.(..(((((....)))))..))))))).....((((........((((-..............))))))))......)))).).)).----- ( -31.74)
>DroPse_CAF1 26087 95 + 1
GU-UGGGGCGUGCGCAUUGAUUGAAUGCUCAAUUGAGCGCAUGAACCGGCGAUCAUUUUGCCUGUACGCCCUCCUA---------CUCCUCC-CCCAACG-AGCCAC
((-((((((((((((.(..(((((....)))))..)))))))).((.(((((.....))))).))...........---------......)-)))))).-...... ( -38.10)
>DroEre_CAF1 13120 99 + 1
GU-UGGGGCGUGCGCAUUGAUUGAAUGCUCAAUUGAGCGCAUGAACCGGCGAUCAUUUUGUAC-AGCGCCCUCCCCCAGCACCGCCCCCUCCGCCCACCG-A-----
((-((((((((((((.(..(((((....)))))..))))))))....((((............-..))))...)))))))....................-.----- ( -35.54)
>DroWil_CAF1 21916 91 + 1
GUUUGGGGCGUGCGCAUUGAUUGAAUGCUCAAUUGAGCGCAUGAACCGGCGAUCAUUUUGUUC-AAUGCCCGACC----------CUCCUCCAGCCACCGCA-----
(.(((((((((((((.(..(((((....)))))..))))))))....((((..((((......-))))..)).))----------...)))))).)......----- ( -28.50)
>DroYak_CAF1 13711 99 + 1
GU-UGGGGCGUGCGCAUUGAUUGAAUGCUCAAUUGAGCGCAUGAACCGGCGAUCAUUUUGUAC-AGCGACCUCCCCCAGCACCGCCCCCUCCGCCCACCG-A-----
((-((((((((((((.(..(((((....)))))..)))))))).....((((.....))))..-.........)))))))....................-.----- ( -32.20)
>DroPer_CAF1 26735 95 + 1
GU-UGGGGCGUGCGCAUUGAUUGAAUGCUCAAUUGAGCGCAUGAACCGGCGAUCAUUUUGCCUGUACGCCCUCCUA---------CUCCUCC-CCCAACG-AGCCAC
((-((((((((((((.(..(((((....)))))..)))))))).((.(((((.....))))).))...........---------......)-)))))).-...... ( -38.10)
>consensus
GU_UGGGGCGUGCGCAUUGAUUGAAUGCUCAAUUGAGCGCAUGAACCGGCGAUCAUUUUGUAC_AACGCCCUCCCC_________CUCCUCCGCCCACCG_A_____
....((..(((((((.(..(((((....)))))..))))))))..))((((...............))))..................................... (-26.53 = -26.56 +   0.03)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:29 2006