| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,543,372 – 9,543,462 |
| Length | 90 |
| Max. P | 0.999784 |
| Location | 9,543,372 – 9,543,462 |
|---|---|
| Length | 90 |
| Sequences | 3 |
| Columns | 93 |
| Reading direction | forward |
| Mean pairwise identity | 69.12 |
| Mean single sequence MFE | -14.02 |
| Consensus MFE | -9.50 |
| Energy contribution | -10.28 |
| Covariance contribution | 0.78 |
| Combinations/Pair | 1.09 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.68 |
| SVM decision value | 4.07 |
| SVM RNA-class probability | 0.999784 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9543372 90 + 22224390 AUUUCCCGCAGCUCAGCAUCUAUACCCCACACCCACC---CCCCUUACUUCAACUGGGGAUCAUAACUCACAAGGGGCACAUAUUCAAUCUUU ...((((((......))....................---((((...........))))..............))))................ ( -13.80) >DroSec_CAF1 3062 72 + 1 --------------AGCAUCCCAACCCC----CAGCC---CCCCUUAGUUCAACUGGGGAUCAUAACUCAGAAGGGGCACAUAUUCAAUCUUU --------------..............----..(((---((((((((.....)))))).((........)).)))))............... ( -17.20) >DroYak_CAF1 3332 84 + 1 AUUUCCCGCAACUU-----CCCCUCCCC----CCUCUCCACCCUGCAGUUCAACUGGGAAUCAUAACUCAGAAGGGGCACAUAUUCAAUCUAU ...(((((((....-----.........----...........))).......(((((........)))))..))))................ ( -11.06) >consensus AUUUCCCGCA_CU_AGCAUCCCAACCCC____CCACC___CCCCUUAGUUCAACUGGGGAUCAUAACUCAGAAGGGGCACAUAUUCAAUCUUU ........................................((((((.......(((((........)))))))))))................ ( -9.50 = -10.28 + 0.78)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:27 2006