| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,542,859 – 9,542,953 |
| Length | 94 |
| Max. P | 0.659680 |
| Location | 9,542,859 – 9,542,953 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | forward |
| Mean pairwise identity | 93.62 |
| Mean single sequence MFE | -28.03 |
| Consensus MFE | -26.67 |
| Energy contribution | -27.23 |
| Covariance contribution | 0.56 |
| Combinations/Pair | 1.07 |
| Mean z-score | -1.49 |
| Structure conservation index | 0.95 |
| SVM decision value | 0.09 |
| SVM RNA-class probability | 0.579474 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9542859 94 + 22224390 ACCCUUGUUAAUGGGUUCCUGGCUUGGUUAGAUUUCAGGGUUGUUUGAUCUCCGCCAGGGGUUGCUUUCUUGCAUAUAAAUCGAGGGAUCCAGG .((((((......((..((((((..((((((((.........))))))))...))))))..))((......))........))))))....... ( -30.50) >DroSec_CAF1 2549 94 + 1 ACCCUUGUUUAUGGGUUCCUGGCUUGAUUAUAUUUCAGGGUUGUUUGAUCUCCUCCAGGGGUUGCUUUCUUGCAUAUAAAUCGAGGGAUCCAGG ((((........)))).((((((((((((((((..(((((..((.....((((....))))..))..))))).)))).)))))))....))))) ( -28.00) >DroEre_CAF1 2738 94 + 1 ACCCUUGCUUAUGGGUUCCUGGUUCGGUUAGAUUUCAGGGUUGUUUGAUCUCCUCUAGGGGUUGCUUUCUUGCAUAUAAAUCGAGGGAUCCCGG .((((((.(((((((..(((((...((((((((.........))))))))....)))))..))((......)).)))))..))))))....... ( -25.60) >consensus ACCCUUGUUUAUGGGUUCCUGGCUUGGUUAGAUUUCAGGGUUGUUUGAUCUCCUCCAGGGGUUGCUUUCUUGCAUAUAAAUCGAGGGAUCCAGG .((((((((((((((..(((((...((((((((.........))))))))....)))))..))((......)).)))))).))))))....... (-26.67 = -27.23 + 0.56)
| Location | 9,542,859 – 9,542,953 |
|---|---|
| Length | 94 |
| Sequences | 3 |
| Columns | 94 |
| Reading direction | reverse |
| Mean pairwise identity | 93.62 |
| Mean single sequence MFE | -22.02 |
| Consensus MFE | -18.93 |
| Energy contribution | -19.27 |
| Covariance contribution | 0.33 |
| Combinations/Pair | 1.00 |
| Mean z-score | -2.07 |
| Structure conservation index | 0.86 |
| SVM decision value | 0.26 |
| SVM RNA-class probability | 0.659680 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9542859 94 - 22224390 CCUGGAUCCCUCGAUUUAUAUGCAAGAAAGCAACCCCUGGCGGAGAUCAAACAACCCUGAAAUCUAACCAAGCCAGGAACCCAUUAACAAGGGU ..((((((....))))))..(((......)))...(((((((((..(((........)))..)))......)))))).((((........)))) ( -21.60) >DroSec_CAF1 2549 94 - 1 CCUGGAUCCCUCGAUUUAUAUGCAAGAAAGCAACCCCUGGAGGAGAUCAAACAACCCUGAAAUAUAAUCAAGCCAGGAACCCAUAAACAAGGGU ((((((((((((.(......(((......))).....).)))).)))).........(((.......)))...)))).((((........)))) ( -22.40) >DroEre_CAF1 2738 94 - 1 CCGGGAUCCCUCGAUUUAUAUGCAAGAAAGCAACCCCUAGAGGAGAUCAAACAACCCUGAAAUCUAACCGAACCAGGAACCCAUAAGCAAGGGU ....((((((((........(((......))).......)))).)))).......((((...((.....))..)))).((((........)))) ( -22.06) >consensus CCUGGAUCCCUCGAUUUAUAUGCAAGAAAGCAACCCCUGGAGGAGAUCAAACAACCCUGAAAUCUAACCAAGCCAGGAACCCAUAAACAAGGGU ....((((((((........(((......))).......)))).)))).......((((..............)))).((((........)))) (-18.93 = -19.27 + 0.33)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:26 2006