Locus 356

Sequence ID X_DroMel_CAF1
Location 1,092,242 – 1,092,337
Length 95
Max. P 0.833721
window537

overview

Window 7

Location 1,092,242 – 1,092,337
Length 95
Sequences 5
Columns 95
Reading direction forward
Mean pairwise identity 79.60
Mean single sequence MFE -23.57
Consensus MFE -14.50
Energy contribution -17.42
Covariance contribution 2.92
Combinations/Pair 1.21
Mean z-score -2.00
Structure conservation index 0.62
SVM decision value 0.72
SVM RNA-class probability 0.833721
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1092242 95 + 22224390
UUACGAACAAGGUGAUGGCGACUUCUGGAUACCCUGCACAUAAUGUAGAAUGUAUUUAGAAGAAACAUGUCCACGGACAACUAACGGCUAUCAUG
...........((((((((..(((((((((((.(((((.....)))))...))))))))))).....((((....)))).......)))))))). ( -31.80)
>DroSec_CAF1 13809 95 + 1
UUACAAACAAUGCGAUGGCGACUUCUGGAUACCCUGCACAUAAUGUAGAAUGUAUUUAGGAGAAACAUGUCCACGGGCAACUAACGGCUAUCAUG
.............((((((..(((((((((((.(((((.....)))))...))))))))))).....((((....)))).......))))))... ( -28.60)
>DroSim_CAF1 13882 95 + 1
UUACAAACAAGGCGAUGGCGACUUCUGGAUACCCUGCACAUAAUGUAGAAUGUAUUUAGAAGAAACAUGUCCACGGGCAACUAACGGCUAUCAUG
.............((((((..(((((((((((.(((((.....)))))...))))))))))).....((((....)))).......))))))... ( -29.10)
>DroEre_CAF1 16431 86 + 1
UCACAGACAAGAUGAUGGCGAUUUCUGGAUACCCUGCACAAA--------U-ACUUUAAAAUAACCAUAUGAAAGGGCAACCAACGGCUAUUAUG
...........((((((((.......((....))........--------.-......................((....))....)))))))). ( -13.60)
>DroYak_CAF1 13001 86 + 1
UCACGGACAAGUUGAUGAUGGCCUCUAGAUACCCUGCACAAA--------U-AAUUUAGAAGAAACAUAUGUAAGGGCAACCAGCGGAUAUCAUG
..............((((((.(((((((((............--------.-.)))))))..............((....))...)).)))))). ( -14.74)
>consensus
UUACAAACAAGGUGAUGGCGACUUCUGGAUACCCUGCACAUAAUGUAGAAUGUAUUUAGAAGAAACAUGUCCACGGGCAACUAACGGCUAUCAUG
.............((((((..(((((((((((.(((((.....)))))...)))))))))))............((....))....))))))... (-14.50 = -17.42 +   2.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:28 2006