Locus 3554

Sequence ID X_DroMel_CAF1
Location 9,527,471 – 9,527,564
Length 93
Max. P 0.590695
window5816

overview

Window 6

Location 9,527,471 – 9,527,564
Length 93
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 80.51
Mean single sequence MFE -35.01
Consensus MFE -25.63
Energy contribution -25.19
Covariance contribution -0.44
Combinations/Pair 1.33
Mean z-score -1.21
Structure conservation index 0.73
SVM decision value 0.11
SVM RNA-class probability 0.590695
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9527471 93 - 22224390
CCAGCGGAUAUCUCUUACU------UUCUGGAGGAGAACCUGCCCGAUGAGCUGGUGUCCUCGAAUAGUGGCUGGUCGGAUCAGCUGACCGGCGG---AGCA
...(((((((((.((((..------.((.(((((....))).)).))))))..)))))))..........(((((((((.....)))))))))..---.)). ( -34.30)
>DroPse_CAF1 10575 93 - 1
UUAGCGGAUAUCUCGUUGU------UUCUGGAAGAGAAUCUGCCCGACGAGCUGGUGUCCUCAAACAGCGGCUGGUCGGAUCAGCUGAGUGGCGG---CGGC
...((((((.((((.....------........))))))))))(((((.(((((.(((......))).))))).)))))....((((.....)))---)... ( -37.12)
>DroGri_CAF1 11569 96 - 1
UUAGCGGAUCUA---UUCUAUUCUAUUCUGGAAGACAAUCUACCCGAUGAGCUGGUGUCUUCGAACAGCGGCUGGUCGGAUCAGCUAAACACUGG---CGGC
(((((((((...---(((((........)))))....))))..(((((.(((((.(((......))).))))).)))))....))))).......---.... ( -29.90)
>DroEre_CAF1 11345 93 - 1
UUAGCGGACAUCUCCUACU------UUCUGGAGGAGAACCUGCCCGAUGAGUUGGUGUCCUCGAGCAGCGGCUGGUCGGAUCAGCUGACCGGCGG---AGCA
...(((((((((....(((------(((.(((((....))).)).)).)))).)))))))........(.(((((((((.....))))))))).)---.)). ( -38.30)
>DroMoj_CAF1 12152 93 - 1
GUAGCGGAUCUG---UACU------UUCUGGAGGACAAUCUGCCCGAUGAGCUGGUGUCCUCCAGCAGUGGCUGGUCGGAUCAGCUGAACACUGGUGGCGGC
.((((.((((((---.((.------..((((((((((.((.((.......)).))))))))))))(((...))))))))))).))))....(((....))). ( -33.30)
>DroPer_CAF1 9267 93 - 1
UUAGCGGAUAUCUCGUUGU------UUCUGGAAGAGAAUCUGCCCGACGAGCUGGUGUCCUCAAACAGCGGCUGGUCGGAUCAGCUGAGUGGCGG---CGGC
...((((((.((((.....------........))))))))))(((((.(((((.(((......))).))))).)))))....((((.....)))---)... ( -37.12)
>consensus
UUAGCGGAUAUCUC_UACU______UUCUGGAAGAGAAUCUGCCCGAUGAGCUGGUGUCCUCGAACAGCGGCUGGUCGGAUCAGCUGAACGGCGG___CGGC
.((((.(((.((((...................))))......(((((.(((((.(((......))).))))).)))))))).))))............... (-25.63 = -25.19 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:16 2006