Locus 3551

Sequence ID X_DroMel_CAF1
Location 9,517,265 – 9,517,364
Length 99
Max. P 0.856514
window5810

overview

Window 0

Location 9,517,265 – 9,517,364
Length 99
Sequences 6
Columns 102
Reading direction reverse
Mean pairwise identity 78.87
Mean single sequence MFE -44.08
Consensus MFE -24.21
Energy contribution -25.10
Covariance contribution 0.89
Combinations/Pair 1.36
Mean z-score -2.21
Structure conservation index 0.55
SVM decision value 0.81
SVM RNA-class probability 0.856514
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 9517265 99 - 22224390
AUACUGCCUCCAGGGGCGGGUGGCAUGUCGCCAUCUACCGUGGCAGUUCCAUCGCCUGUUUCAG---GAGGAGCGGGAGCCGGUGGAAUGGGUGGAAUGACA
...(..((((((.((..(((((((.....))))))).)).)))..(((((((((((((((((..---..))))))))...))))))))))))..)....... ( -46.40)
>DroSec_CAF1 856 99 - 1
AUACUGCCUCCAGGGGCGGGUGGCAUGUCGCCAUCUACAGUGGCAGUUCCAUCGCCUGUUUCAG---GAGGAGCGGGAGUCGGUGGAAUGGGUGGAAUGACA
...((((((....))))))......(((((((((.....))))).(((((((((((((((((..---..))))))))...))))))))).........)))) ( -41.90)
>DroSim_CAF1 865 99 - 1
AUACUACCUCCAGGGGCGGGUGGCAUGUCGCCAUCUACAGUGGCAGUUCCAUCGCCUGUUUCAG---GAGGAGCGGGAGUCGGUGGAAUGGGUGGAAUGACA
...(((((((((..(..(((((((.....))))))).)..)))..(((((((((((((((((..---..))))))))...)))))))))))))))....... ( -42.70)
>DroWil_CAF1 928 87 - 1
AUUAUGCCACCAGGAGCUGGCGGAAUGUCGCCAUCAACGGUCCCAGUGCCCUCGCCUGUGUCGG---GCG------------GUGGCGGAGGCGGCAUGACA
.(((((((.((.(((.(((((((....)))))).....).)))...((((.(((((((...)))---)))------------).))))..)).))))))).. ( -40.00)
>DroYak_CAF1 877 99 - 1
AUACUGCCGCCAGGAGCGGGUGGCAUGUCGCCAUCUACCGUGGCAGUACCAUCGCCCGUUUCAG---GAGGAGCUGGCGCCGGUGGUAUGGGCGGAAUGACC
...(((((((((.(.(..((((((.....))))))..)).)))).(((((((((((.(((((..---..))))).))))...))))))).)))))....... ( -48.40)
>DroAna_CAF1 970 102 - 1
AUAAUGCCACCGGGCGCUGGUGGCAUGUCGCCUUCAACGGUGACAGUUCCAUCUCCAGUCUCGGGCGGAGGAGCCGGAGCCAAUGCCAUGGCGGGCAUGACG
...(((((.((((((((((((((..(((((((......)))))))...)))...)))))(((.(((......))).))).....))).)))..))))).... ( -45.10)
>consensus
AUACUGCCUCCAGGGGCGGGUGGCAUGUCGCCAUCUACAGUGGCAGUUCCAUCGCCUGUUUCAG___GAGGAGCGGGAGCCGGUGGAAUGGGUGGAAUGACA
...((((((((((((((((((((..((((((........))))))......)))))))))))..........((....))...))))...)))))....... (-24.21 = -25.10 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:10 2006