| Sequence ID | X_DroMel_CAF1 |
|---|---|
| Location | 9,514,285 – 9,514,389 |
| Length | 104 |
| Max. P | 0.968035 |
| Location | 9,514,285 – 9,514,389 |
|---|---|
| Length | 104 |
| Sequences | 4 |
| Columns | 112 |
| Reading direction | reverse |
| Mean pairwise identity | 82.41 |
| Mean single sequence MFE | -26.67 |
| Consensus MFE | -17.16 |
| Energy contribution | -17.23 |
| Covariance contribution | 0.06 |
| Combinations/Pair | 1.19 |
| Mean z-score | -2.67 |
| Structure conservation index | 0.64 |
| SVM decision value | 1.62 |
| SVM RNA-class probability | 0.968035 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>X_DroMel_CAF1 9514285 104 - 22224390 ---ACAUCUCGAUGUGACGACGUUUAAAACGUUGAGCGAAAGC---UAAUAACCUUUCCUUAGUG-ACUUACAUC-GGAAUGUUUAGUAAAGUAACAUUAUUUAUUUCGUGA ---((((..((((((((((((((.....))))))(((....))---)..................-..)))))))-)..))))...(..((((((......))))))..).. ( -26.10) >DroSec_CAF1 9920 104 - 1 ---ACAUCUCGAUGUGACGACGUUUAAAACGUUGAGCGAAAGC---UAAAAACCUUUCCUUAGUG-ACUUACAUC-GGAAUGUUUAGUUAAGUAACAUUAUUUAUUUCGUGA ---((((..((((((((((((((.....))))))(((....))---)..................-..)))))))-)..)))).....((((((....))))))........ ( -26.10) >DroEre_CAF1 9613 103 - 1 UAGACAUCUCGAUGUGACGGCGUUUAAAACGUUGAGCGAAAGC---UAAAUACCCUUCCUUAGUGCACUCACAUC-GAAAC-----GUAAAGUAACAUUAUUCAAAUGGUUA ..(((...(((((((((((((((.....))))))(((....))---).....................)))))))-))...-----.........((((.....))))))). ( -25.90) >DroYak_CAF1 9941 104 - 1 ---ACAUCUCGAUGUGACAGCGUUCAAAACGUUGAGCGAAAGCUGCUAAAUAGCUUUCCUA-----ACUCACAUGUGAAAUGUUUAGUAAAGUAAUAUUAUUUAUUUUGUGA ---((((.(((((((((((((((.....))))))((.((((((((.....)))))))))).-----..)))))).))).))))....((((((((......))))))))... ( -28.60) >consensus ___ACAUCUCGAUGUGACGACGUUUAAAACGUUGAGCGAAAGC___UAAAAACCUUUCCUUAGUG_ACUCACAUC_GAAAUGUUUAGUAAAGUAACAUUAUUUAUUUCGUGA ...((((.(((((((((((((((.....)))))).((....)).........................))))))).)).))))............................. (-17.16 = -17.23 + 0.06)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 11:02:09 2006