Locus 355

Sequence ID X_DroMel_CAF1
Location 1,091,604 – 1,091,707
Length 103
Max. P 0.681910
window536

overview

Window 6

Location 1,091,604 – 1,091,707
Length 103
Sequences 3
Columns 103
Reading direction reverse
Mean pairwise identity 94.08
Mean single sequence MFE -27.63
Consensus MFE -24.81
Energy contribution -24.70
Covariance contribution -0.11
Combinations/Pair 1.07
Mean z-score -1.91
Structure conservation index 0.90
SVM decision value 0.31
SVM RNA-class probability 0.681910
Prediction RNA

Download alignment: ClustalW | MAF

>X_DroMel_CAF1 1091604 103 - 22224390
UAUCAGGAUGAUGUUCUGAUAUAUUUCCUAAGCACCUCAGACGGUAGAAGUUGGGGAAGGAGUAGAAAAGCAGGAGGAGGUUGCGAAUCGGAACGAAUCGGAA
..((..(((..(((((((((..(((((((.....((((((.(.......))))))).....((......))...))))))).....))))))))).))).)). ( -24.70)
>DroSec_CAF1 13139 98 - 1
UAUCAGGAUGAUGUUCUGAUAUAUUUCCUAAGCACCUCAGACGGCAGAAGUUGGGGAAGGAGUA-----GCAGGAGGAGGUUGCGAAUCGGAACAUACCGGAA
..((.((...((((((((((..(((((((..((..(((...((((....))))......)))..-----))...))))))).....)))))))))).)).)). ( -29.10)
>DroSim_CAF1 13212 98 - 1
UAUCAGGAUGAUGUUCUGAUAUAUUUCCUAAGCACCUCAGACGGCAGAAGUUGGGGAAGGAGUA-----GCAGGAGGAGGUUGCGAAUCGGAACAUACCGGAA
..((.((...((((((((((..(((((((..((..(((...((((....))))......)))..-----))...))))))).....)))))))))).)).)). ( -29.10)
>consensus
UAUCAGGAUGAUGUUCUGAUAUAUUUCCUAAGCACCUCAGACGGCAGAAGUUGGGGAAGGAGUA_____GCAGGAGGAGGUUGCGAAUCGGAACAUACCGGAA
..((.((...((((((((((..(((((((.....((((((.(.......))))))).....((......))...))))))).....)))))))))).)).)). (-24.81 = -24.70 +  -0.11)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:42:27 2006